Detailed information
Bioinformatically predicted
Overview
| Name | pilJ | Type | Machinery gene |
| Locus tag | NC849_RS02340 | Genome accession | NZ_CP098462 |
| Coordinates | 452839..453807 (+) | Length | 322 a.a. |
| NCBI ID | WP_260236889.1 | Uniprot ID | - |
| Organism | Neisseria gonorrhoeae strain 9460 | ||
| Function | type IV pilus (predicted from homology) DNA binding and uptake |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 444408..499890 | 452839..453807 | within | 0 |
Gene organization within MGE regions
Location: 444408..499890
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NC849_RS02290 (NC849_02280) | - | 444408..445484 (-) | 1077 | WP_003701047.1 | sulfate/molybdate ABC transporter ATP-binding protein | - |
| NC849_RS02295 (NC849_02285) | - | 445507..445641 (-) | 135 | Protein_447 | IS5/IS1182 family transposase | - |
| NC849_RS02300 (NC849_02290) | cysW | 445625..446446 (-) | 822 | WP_260236886.1 | sulfate ABC transporter permease subunit CysW | - |
| NC849_RS02305 (NC849_02295) | cysT | 446635..447471 (-) | 837 | WP_260236887.1 | sulfate ABC transporter permease subunit CysT | - |
| NC849_RS02310 (NC849_02300) | - | 447652..447984 (+) | 333 | WP_003687908.1 | hypothetical protein | - |
| NC849_RS02315 (NC849_02305) | - | 448343..448852 (+) | 510 | WP_003687909.1 | isoprenylcysteine carboxyl methyltransferase family protein | - |
| NC849_RS02320 (NC849_02310) | - | 449082..449663 (-) | 582 | WP_003701053.1 | superoxide dismutase | - |
| NC849_RS02325 (NC849_02315) | dnaB | 449826..451232 (+) | 1407 | WP_241532347.1 | replicative DNA helicase | - |
| NC849_RS02330 (NC849_02320) | pilH | 451540..452205 (+) | 666 | WP_260236888.1 | Tfp pilus assembly protein FimT/FimU | Machinery gene |
| NC849_RS02335 (NC849_02325) | pilI | 452234..452842 (+) | 609 | WP_033910489.1 | type IV pilus modification protein PilV | Machinery gene |
| NC849_RS02340 (NC849_02330) | pilJ | 452839..453807 (+) | 969 | WP_260236889.1 | PilW family protein | Machinery gene |
| NC849_RS02345 (NC849_02335) | pilK | 453786..454394 (+) | 609 | WP_215318018.1 | PilX N-terminal domain-containing pilus assembly protein | Machinery gene |
| NC849_RS02350 (NC849_02340) | pilL | 454396..454869 (+) | 474 | WP_260237126.1 | PilX family type IV pilin | Machinery gene |
| NC849_RS02355 (NC849_02345) | - | 455481..455926 (-) | 446 | Protein_459 | AzlC family ABC transporter permease | - |
| NC849_RS02360 (NC849_02350) | dut | 456092..456544 (+) | 453 | WP_260236890.1 | dUTP diphosphatase | - |
| NC849_RS02365 (NC849_02355) | dapC | 456622..457809 (+) | 1188 | WP_260236891.1 | succinyldiaminopimelate transaminase | - |
| NC849_RS02370 (NC849_02360) | yaaA | 458120..458899 (+) | 780 | WP_260236892.1 | peroxide stress protein YaaA | - |
| NC849_RS02385 (NC849_02375) | - | 459430..460622 (+) | 1193 | Protein_463 | tyrosine-type recombinase/integrase | - |
| NC849_RS02390 (NC849_02380) | - | 460977..461246 (-) | 270 | WP_003687928.1 | hypothetical protein | - |
| NC849_RS02395 (NC849_02385) | - | 461441..462124 (-) | 684 | WP_003687929.1 | DUF2786 domain-containing protein | - |
| NC849_RS11860 | - | 462405..462671 (-) | 267 | Protein_466 | hypothetical protein | - |
| NC849_RS02405 (NC849_02395) | - | 462782..462997 (-) | 216 | WP_003691538.1 | hypothetical protein | - |
| NC849_RS02410 (NC849_02400) | - | 463049..463540 (-) | 492 | WP_260236893.1 | siphovirus Gp157 family protein | - |
| NC849_RS02415 (NC849_02405) | - | 463537..463719 (-) | 183 | WP_260236894.1 | hypothetical protein | - |
| NC849_RS02420 (NC849_02410) | - | 463859..464545 (-) | 687 | WP_042758540.1 | phage replication initiation protein, NGO0469 family | - |
| NC849_RS02425 (NC849_02415) | - | 464614..464775 (-) | 162 | WP_003702497.1 | hypothetical protein | - |
| NC849_RS02430 (NC849_02420) | - | 464772..465050 (-) | 279 | WP_003691529.1 | NGO1622 family putative holin | - |
| NC849_RS02435 (NC849_02425) | - | 465203..465535 (-) | 333 | WP_003687946.1 | hypothetical protein | - |
| NC849_RS02440 (NC849_02430) | - | 465676..465870 (-) | 195 | WP_003703103.1 | hypothetical protein | - |
| NC849_RS02445 (NC849_02435) | - | 466354..466572 (+) | 219 | WP_003691731.1 | hypothetical protein | - |
| NC849_RS02450 (NC849_02440) | - | 466589..466948 (-) | 360 | WP_003691733.1 | hypothetical protein | - |
| NC849_RS02455 (NC849_02445) | - | 466949..467488 (-) | 540 | WP_003695998.1 | Panacea domain-containing protein | - |
| NC849_RS02460 (NC849_02450) | - | 467648..468364 (-) | 717 | WP_003695999.1 | helix-turn-helix transcriptional regulator | - |
| NC849_RS02465 (NC849_02455) | - | 468745..468972 (+) | 228 | WP_050158909.1 | helix-turn-helix domain-containing protein | - |
| NC849_RS02470 (NC849_02460) | - | 468969..469106 (+) | 138 | WP_010359998.1 | hypothetical protein | - |
| NC849_RS02475 (NC849_02465) | - | 469090..470088 (+) | 999 | WP_050161100.1 | hypothetical protein | - |
| NC849_RS02480 (NC849_02470) | - | 470085..471446 (+) | 1362 | WP_260236895.1 | DnaB-like helicase C-terminal domain-containing protein | - |
| NC849_RS02485 (NC849_02475) | - | 471463..471708 (+) | 246 | WP_260245438.1 | hypothetical protein | - |
| NC849_RS02490 (NC849_02480) | - | 471783..472277 (+) | 495 | WP_260236897.1 | DUF3310 domain-containing protein | - |
| NC849_RS02495 (NC849_02485) | - | 472475..472624 (+) | 150 | WP_003692854.1 | hypothetical protein | - |
| NC849_RS02500 (NC849_02490) | - | 472653..472934 (+) | 282 | WP_229691900.1 | hypothetical protein | - |
| NC849_RS02505 (NC849_02495) | - | 472925..473359 (+) | 435 | WP_260245439.1 | RusA family crossover junction endodeoxyribonuclease | - |
| NC849_RS02510 (NC849_02500) | - | 473352..473657 (+) | 306 | WP_053015205.1 | DUF1364 domain-containing protein | - |
| NC849_RS02515 (NC849_02505) | - | 473654..474037 (+) | 384 | WP_003687982.1 | recombination protein NinB | - |
| NC849_RS02520 (NC849_02510) | - | 474028..474546 (+) | 519 | WP_003687984.1 | HNH endonuclease | - |
| NC849_RS02525 (NC849_02515) | - | 474611..475033 (+) | 423 | WP_003690919.1 | hypothetical protein | - |
| NC849_RS02530 (NC849_02520) | - | 475033..475572 (+) | 540 | WP_003693457.1 | hypothetical protein | - |
| NC849_RS02535 (NC849_02525) | - | 475553..476827 (+) | 1275 | WP_311201960.1 | PBSX family phage terminase large subunit | - |
| NC849_RS02540 (NC849_02530) | - | 476812..479079 (+) | 2268 | WP_225577699.1 | hypothetical protein | - |
| NC849_RS02545 (NC849_02535) | - | 479319..479843 (+) | 525 | WP_260236900.1 | hypothetical protein | - |
| NC849_RS02550 (NC849_02540) | - | 479840..480514 (+) | 675 | WP_260236901.1 | hypothetical protein | - |
| NC849_RS02555 (NC849_02545) | - | 480511..488265 (+) | 7755 | WP_260236902.1 | PLxRFG domain-containing protein | - |
| NC849_RS02560 (NC849_02550) | - | 488363..488770 (+) | 408 | WP_082298808.1 | hypothetical protein | - |
| NC849_RS02565 (NC849_02555) | - | 488781..489206 (+) | 426 | WP_106336882.1 | hypothetical protein | - |
| NC849_RS02570 (NC849_02560) | - | 489199..490086 (+) | 888 | WP_082298758.1 | hypothetical protein | - |
| NC849_RS02575 (NC849_02565) | - | 490086..490466 (+) | 381 | WP_082298757.1 | hypothetical protein | - |
| NC849_RS02580 (NC849_02570) | - | 490469..493675 (+) | 3207 | WP_260245440.1 | hypothetical protein | - |
| NC849_RS02585 (NC849_02575) | - | 493663..494856 (+) | 1194 | WP_134921505.1 | hypothetical protein | - |
| NC849_RS02590 (NC849_02580) | - | 494941..495840 (+) | 900 | WP_260236904.1 | hypothetical protein | - |
| NC849_RS02600 (NC849_02590) | - | 495861..497156 (+) | 1296 | Protein_505 | DUF4043 family protein | - |
| NC849_RS02605 (NC849_02595) | - | 497215..497688 (+) | 474 | WP_003693439.1 | hypothetical protein | - |
| NC849_RS02610 (NC849_02600) | - | 497694..498179 (+) | 486 | WP_003693438.1 | hypothetical protein | - |
| NC849_RS02615 (NC849_02605) | - | 498176..498850 (+) | 675 | WP_003693436.1 | hypothetical protein | - |
| NC849_RS02620 (NC849_02610) | - | 498853..499002 (+) | 150 | WP_017146863.1 | hypothetical protein | - |
| NC849_RS02625 (NC849_02615) | - | 499039..499890 (-) | 852 | WP_106336892.1 | Bro-N domain-containing protein | - |
Sequence
Protein
Download Length: 322 a.a. Molecular weight: 35350.29 Da Isoelectric Point: 9.1851
>NTDB_id=695726 NC849_RS02340 WP_260236889.1 452839..453807(+) (pilJ) [Neisseria gonorrhoeae strain 9460]
MKRKMLNVPKGGYDGMKGFTIVEFLVAGLLSVIVLIAVVSSYFTSRKLNDAANERLAIQQDLRNVATLIVRDARMAGSFG
CFNMSEHTKDDIVDSSNQTQSNPAKPGAKQENPLFSLKRSGMDKQLIPVAESTDIKYPGFTQRLNALVFQYGIDDLDASA
ETVVVSSCSKIAKPGKKISTLQEAKSALQITNDDKQNGNITRQKHVVNAYAVGMIAGEEGLFRFQLDDKGKWGNPQLLAK
KIKRMDVRYIYVSGCPEDEDAGKEEQFKYTDRFDRSVTPAGVEVLLDSGLNAKIAASSDNSIYAYRINATIRGGNVCANR
TL
MKRKMLNVPKGGYDGMKGFTIVEFLVAGLLSVIVLIAVVSSYFTSRKLNDAANERLAIQQDLRNVATLIVRDARMAGSFG
CFNMSEHTKDDIVDSSNQTQSNPAKPGAKQENPLFSLKRSGMDKQLIPVAESTDIKYPGFTQRLNALVFQYGIDDLDASA
ETVVVSSCSKIAKPGKKISTLQEAKSALQITNDDKQNGNITRQKHVVNAYAVGMIAGEEGLFRFQLDDKGKWGNPQLLAK
KIKRMDVRYIYVSGCPEDEDAGKEEQFKYTDRFDRSVTPAGVEVLLDSGLNAKIAASSDNSIYAYRINATIRGGNVCANR
TL
Nucleotide
Download Length: 969 bp
>NTDB_id=695726 NC849_RS02340 WP_260236889.1 452839..453807(+) (pilJ) [Neisseria gonorrhoeae strain 9460]
ATGAAACGTAAAATGCTAAACGTACCAAAGGGCGGTTATGATGGTATGAAGGGTTTTACCATTGTTGAATTTCTGGTTGC
GGGCCTGCTCAGTGTGATTGTCCTGATAGCGGTCGTATCGAGTTACTTTACATCCCGGAAATTAAATGATGCGGCAAACG
AGCGTCTTGCCATTCAACAGGATTTGCGGAATGTGGCAACATTAATTGTCCGCGATGCAAGAATGGCGGGGAGCTTCGGT
TGTTTCAATATGTCCGAGCATACTAAAGACGATATTGTTGATTCAAGTAATCAAACTCAATCTAACCCTGCAAAACCCGG
TGCCAAACAAGAAAATCCCCTTTTTTCCTTAAAAAGGAGCGGCATGGATAAACAACTGATTCCCGTTGCTGAATCCACAG
ATATTAAATATCCGGGTTTTACCCAGCGCCTTAACGCATTGGTTTTCCAATACGGTATCGATGATCTTGATGCGAGTGCT
GAGACTGTTGTAGTCAGCAGCTGTTCCAAAATAGCAAAACCGGGTAAGAAAATATCTACCTTGCAAGAAGCAAAGAGTGC
ATTACAGATTACTAATGATGATAAACAAAATGGAAATATCACCCGTCAGAAACATGTGGTCAATGCCTATGCGGTCGGCA
TGATTGCCGGTGAGGAAGGTTTGTTCCGCTTCCAATTGGATGATAAGGGCAAGTGGGGTAATCCTCAGTTGCTCGCGAAA
AAGATTAAACGTATGGATGTGCGGTATATTTATGTTTCCGGTTGTCCTGAAGATGAAGATGCCGGCAAAGAGGAACAATT
CAAATATACGGATAGATTCGACAGATCTGTTACGCCTGCCGGGGTGGAGGTTTTATTGGATAGCGGCCTTAATGCCAAGA
TTGCCGCTTCTTCAGACAATAGTATTTATGCTTACCGTATCAATGCGACAATACGCGGGGGAAATGTATGCGCAAACAGA
ACACTTTGA
ATGAAACGTAAAATGCTAAACGTACCAAAGGGCGGTTATGATGGTATGAAGGGTTTTACCATTGTTGAATTTCTGGTTGC
GGGCCTGCTCAGTGTGATTGTCCTGATAGCGGTCGTATCGAGTTACTTTACATCCCGGAAATTAAATGATGCGGCAAACG
AGCGTCTTGCCATTCAACAGGATTTGCGGAATGTGGCAACATTAATTGTCCGCGATGCAAGAATGGCGGGGAGCTTCGGT
TGTTTCAATATGTCCGAGCATACTAAAGACGATATTGTTGATTCAAGTAATCAAACTCAATCTAACCCTGCAAAACCCGG
TGCCAAACAAGAAAATCCCCTTTTTTCCTTAAAAAGGAGCGGCATGGATAAACAACTGATTCCCGTTGCTGAATCCACAG
ATATTAAATATCCGGGTTTTACCCAGCGCCTTAACGCATTGGTTTTCCAATACGGTATCGATGATCTTGATGCGAGTGCT
GAGACTGTTGTAGTCAGCAGCTGTTCCAAAATAGCAAAACCGGGTAAGAAAATATCTACCTTGCAAGAAGCAAAGAGTGC
ATTACAGATTACTAATGATGATAAACAAAATGGAAATATCACCCGTCAGAAACATGTGGTCAATGCCTATGCGGTCGGCA
TGATTGCCGGTGAGGAAGGTTTGTTCCGCTTCCAATTGGATGATAAGGGCAAGTGGGGTAATCCTCAGTTGCTCGCGAAA
AAGATTAAACGTATGGATGTGCGGTATATTTATGTTTCCGGTTGTCCTGAAGATGAAGATGCCGGCAAAGAGGAACAATT
CAAATATACGGATAGATTCGACAGATCTGTTACGCCTGCCGGGGTGGAGGTTTTATTGGATAGCGGCCTTAATGCCAAGA
TTGCCGCTTCTTCAGACAATAGTATTTATGCTTACCGTATCAATGCGACAATACGCGGGGGAAATGTATGCGCAAACAGA
ACACTTTGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilJ | Neisseria gonorrhoeae MS11 |
78.462 |
100 |
0.792 |