Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   PCP65_RS26220 Genome accession   NZ_CP115203
Coordinates   5592530..5593255 (+) Length   241 a.a.
NCBI ID   WP_030047637.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain F070     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5587530..5598255
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP65_RS26190 (PCP65_26185) - 5587650..5588528 (-) 879 WP_010793521.1 5-oxoprolinase subunit B family protein -
  PCP65_RS26195 (PCP65_26190) - 5588530..5589906 (-) 1377 WP_023081617.1 acetyl-CoA carboxylase biotin carboxylase subunit -
  PCP65_RS26200 (PCP65_26195) - 5589917..5590165 (-) 249 WP_016561527.1 acetyl-CoA carboxylase -
  PCP65_RS26205 (PCP65_26200) - 5590242..5591000 (-) 759 WP_003103315.1 5-oxoprolinase subunit PxpA -
  PCP65_RS26210 (PCP65_26205) - 5591118..5592044 (+) 927 WP_003118849.1 LysR family transcriptional regulator -
  PCP65_RS26215 (PCP65_26210) - 5592098..5592391 (+) 294 WP_003113255.1 hypothetical protein -
  PCP65_RS26220 (PCP65_26215) comF 5592530..5593255 (+) 726 WP_030047637.1 ComF family protein Machinery gene
  PCP65_RS26225 (PCP65_26220) - 5593297..5593617 (+) 321 WP_003111112.1 YfiM family lipoprotein -
  PCP65_RS26230 (PCP65_26225) - 5593685..5594443 (+) 759 WP_003084796.1 TOBE domain-containing protein -
  PCP65_RS26235 (PCP65_26230) - 5594505..5595479 (+) 975 WP_003084794.1 serine/threonine protein kinase -
  PCP65_RS26240 (PCP65_26235) rarD 5595682..5596578 (+) 897 WP_003103301.1 EamA family transporter RarD -
  PCP65_RS26245 (PCP65_26240) - 5597268..5597783 (-) 516 WP_003084789.1 glycine cleavage system protein R -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 26946.48 Da        Isoelectric Point: 11.4215

>NTDB_id=695458 PCP65_RS26220 WP_030047637.1 5592530..5593255(+) (comF) [Pseudomonas aeruginosa strain F070]
MSFPLRPLTRWLLPPPACLLCAARSDQPPRPLCRACAADLPWSRQQCRRCALPLPLDGQVCGECLRRPPAYEQAIAPWRY
AFPLDSLINRFKHQAAWPLGRLLGKLLAEHLRQRYAEGLPRPARLLPVPLAPRRERRRGFNQAQQLAERLAGGLDLRSDP
HSLRRVLDTPAQQGLDATVRRRNLRHAFALAPASDVRGLHLALVDDVLTTGATAECLSRLLRRAGAARVDVYCLARTPKP
G

Nucleotide


Download         Length: 726 bp        

>NTDB_id=695458 PCP65_RS26220 WP_030047637.1 5592530..5593255(+) (comF) [Pseudomonas aeruginosa strain F070]
ATGTCGTTCCCGCTTCGTCCTCTCACGCGCTGGCTTTTGCCGCCGCCGGCCTGCCTGCTCTGCGCCGCCCGCAGCGACCA
GCCGCCCCGCCCGCTGTGCCGCGCCTGTGCCGCCGACCTGCCCTGGTCGCGCCAGCAGTGCCGGCGCTGCGCCCTGCCCC
TGCCGCTGGACGGCCAGGTGTGCGGCGAGTGCCTGCGCCGCCCGCCGGCCTATGAACAGGCGATCGCGCCCTGGCGCTAC
GCCTTTCCGCTCGACAGCCTGATCAACCGCTTCAAGCACCAGGCGGCCTGGCCGCTGGGGCGGCTGCTCGGCAAGTTGCT
GGCGGAACACCTGCGGCAACGCTACGCCGAAGGCCTGCCGCGCCCGGCACGCCTGCTGCCGGTCCCGCTGGCGCCACGGC
GCGAACGTCGGCGCGGCTTCAACCAGGCGCAACAGCTCGCCGAGCGACTGGCCGGCGGGCTGGACCTGCGCAGCGATCCG
CACAGCCTGCGGCGAGTGCTGGATACGCCGGCCCAGCAGGGCCTGGACGCGACGGTGCGGCGGCGCAACCTGCGCCACGC
CTTCGCCCTGGCGCCCGCCAGCGATGTTCGCGGGCTGCACCTGGCACTGGTGGACGACGTGCTCACCACCGGGGCCACCG
CCGAGTGCCTTTCCCGCCTGTTGCGCCGGGCGGGCGCCGCGCGGGTCGACGTCTACTGCCTGGCGCGCACGCCGAAGCCC
GGCTGA

Domains

Predicted by InterProScan.

Double zinc ribbon domain (DZR_2)

(9-65)

Phosphoribosyl transferase domain (Pribosyltran)

(137-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

38.589

100

0.386