Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   PCP42_RS04610 Genome accession   NZ_CP115202
Coordinates   998024..998548 (-) Length   174 a.a.
NCBI ID   WP_003116136.1    Uniprot ID   A0A0H2ZIN8
Organism   Pseudomonas aeruginosa strain F071     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 993024..1003548
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP42_RS04595 (PCP42_04600) aroB 994152..995258 (-) 1107 WP_003107839.1 3-dehydroquinate synthase -
  PCP42_RS04600 (PCP42_04605) aroK 995308..995826 (-) 519 WP_003095833.1 shikimate kinase AroK -
  PCP42_RS04605 (PCP42_04610) pilQ 995838..997970 (-) 2133 WP_003141780.1 type 4a pilus secretin PilQ Machinery gene
  PCP42_RS04610 (PCP42_04615) comL/pilP 998024..998548 (-) 525 WP_003116136.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  PCP42_RS04615 (PCP42_04620) pilO 998545..999168 (-) 624 WP_003116135.1 type 4a pilus biogenesis protein PilO Machinery gene
  PCP42_RS04620 (PCP42_04625) pilN 999165..999761 (-) 597 WP_003141783.1 type 4a pilus biogenesis protein PilN -
  PCP42_RS04625 (PCP42_04630) pilM 999761..1000825 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  PCP42_RS04630 (PCP42_04635) - 1001010..1003481 (+) 2472 WP_003141786.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19224.07 Da        Isoelectric Point: 9.7252

>NTDB_id=695294 PCP42_RS04610 WP_003116136.1 998024..998548(-) (comL/pilP) [Pseudomonas aeruginosa strain F071]
MRARLILSSLLLTMLAGCGANSEFGDLQAYMNEVRARPKGNIEPLPKFQPYEAFTYSASNLRSPFQPPVKIDLTVRQKGN
KVVKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=695294 PCP42_RS04610 WP_003116136.1 998024..998548(-) (comL/pilP) [Pseudomonas aeruginosa strain F071]
ATGAGAGCCCGCCTGATTCTGAGCAGCTTGCTGCTCACCATGCTTGCCGGTTGCGGCGCGAATTCCGAGTTCGGCGATCT
TCAAGCCTATATGAACGAGGTACGTGCTCGACCTAAGGGCAATATCGAGCCTCTGCCGAAGTTTCAGCCATATGAAGCTT
TTACTTATAGCGCTTCGAACCTGCGTAGTCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAAGGCAAC
AAGGTGGTTAAACCCGACGAGACACGGGTCAAGCAGTTCCTGGAAGGTTTCAACATCGAAACCTTCGAGATGGTCGGCAC
ACTGTCCAACGCCCAGGGTACCTTCGCCTTGGTGAAGGGCGCAGGTGGCGTGCATCGGGTGAGGGTCGGGGACTACCTGG
GACGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATTGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZIN8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.628

98.851

0.362