Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   M9189_RS12435 Genome accession   NZ_CP098400
Coordinates   3005421..3006791 (-) Length   456 a.a.
NCBI ID   WP_250723674.1    Uniprot ID   -
Organism   Xiashengella succiniciproducens strain Ai-910     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3000421..3011791
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M9189_RS12430 (M9189_12430) - 3002977..3005328 (+) 2352 WP_250723672.1 penicillin-binding protein 1A -
  M9189_RS12435 (M9189_12435) radA 3005421..3006791 (-) 1371 WP_250723674.1 DNA repair protein RadA Machinery gene
  M9189_RS12440 (M9189_12440) panD 3006984..3007334 (-) 351 WP_250723676.1 aspartate 1-decarboxylase -
  M9189_RS12445 (M9189_12445) panC 3007337..3008185 (-) 849 WP_250723680.1 pantoate--beta-alanine ligase -
  M9189_RS12450 (M9189_12450) - 3008384..3009184 (+) 801 WP_250723681.1 glycogen/starch synthase -
  M9189_RS12455 (M9189_12455) - 3009235..3010668 (+) 1434 WP_250723682.1 DUF4270 family protein -
  M9189_RS12460 (M9189_12460) - 3010673..3011281 (-) 609 WP_250723683.1 riboflavin synthase -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 49937.74 Da        Isoelectric Point: 6.4001

>NTDB_id=695271 M9189_RS12435 WP_250723674.1 3005421..3006791(-) (radA) [Xiashengella succiniciproducens strain Ai-910]
MAKTKTVYICSNCGTESPKWIGKCFSCGEWNTFVEEVVQTGKNSLRSQPLPGEITRATPLPVSGIDTQRLPRIDTGIEEL
NRVLGGGMVPGSLILLGGEPGIGKSTLVLQMALRLSRYKVLYVSGEESPGQIKLRADRLLPDHGDHCLILCETSVEQIIA
HIYNEKPDILIIDSIQTLEREGVESAPGSVTQVRESSAAILRVAKEQNLPVLLIGHINKEGSLAGPKVLEHMVDVVLQFE
GDRHYMYRIIRSVKNRFGSTSEIGIFEMESGGLREVTNPSEMLLAHQDEEMSGIAICAALEGVRPFLIEVQALASTAAYG
TPQRSSTGFDLRRLNMLLAVLEKRAGFKLAAKDVFLNIAGGLKVTDPAIDLAVVSAILSSNTDLPVSRDLCLTGEVGLSG
EIRPVTRIEQRIIEAEKLGFKTIIIPRYNKGINFNKFEIRIQQCGKIEEAFRSLFS

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=695271 M9189_RS12435 WP_250723674.1 3005421..3006791(-) (radA) [Xiashengella succiniciproducens strain Ai-910]
ATGGCCAAGACTAAAACTGTATATATCTGTAGTAACTGTGGTACTGAATCTCCCAAGTGGATAGGAAAATGCTTTTCTTG
TGGTGAGTGGAATACTTTTGTTGAAGAGGTCGTTCAGACCGGAAAGAATAGTCTGAGGTCGCAGCCTTTGCCAGGTGAGA
TAACCAGGGCAACGCCACTCCCGGTAAGCGGAATAGATACACAACGTCTGCCCAGGATTGACACAGGTATTGAGGAATTA
AACAGGGTGCTTGGAGGTGGGATGGTTCCCGGATCACTTATTCTTTTGGGTGGCGAACCGGGTATAGGGAAGTCAACCCT
TGTCCTGCAAATGGCACTGAGACTAAGTAGGTATAAGGTGCTATATGTATCAGGTGAGGAAAGTCCGGGGCAAATCAAAC
TAAGGGCTGACCGTCTCTTGCCTGATCATGGAGACCATTGCCTGATATTATGCGAAACATCGGTTGAGCAGATTATCGCT
CATATATATAATGAGAAACCTGACATTCTGATAATTGATTCAATCCAAACACTTGAAAGGGAAGGTGTAGAATCAGCTCC
GGGAAGTGTTACCCAGGTACGAGAATCATCTGCTGCTATTCTTAGGGTTGCTAAGGAGCAAAACCTACCGGTTTTGCTCA
TTGGACACATCAACAAGGAAGGCAGTCTGGCCGGTCCCAAGGTACTTGAGCACATGGTGGATGTTGTGCTGCAATTTGAA
GGCGACCGTCATTATATGTATCGCATCATCCGATCAGTAAAGAACCGTTTTGGTTCAACTTCGGAGATAGGAATTTTTGA
GATGGAAAGCGGAGGGTTGAGGGAGGTAACCAATCCCAGCGAAATGCTGCTTGCCCATCAGGATGAGGAAATGAGCGGAA
TAGCGATCTGTGCTGCCTTGGAGGGGGTTCGTCCATTTCTGATAGAGGTTCAGGCATTGGCAAGTACTGCAGCCTATGGT
ACGCCACAAAGATCATCAACTGGGTTTGACTTGCGCAGACTTAATATGTTACTGGCTGTACTTGAAAAGCGTGCCGGGTT
CAAACTGGCTGCAAAGGATGTCTTCCTTAATATTGCAGGTGGGCTGAAGGTAACCGACCCTGCAATTGACCTGGCTGTTG
TGAGTGCCATTCTGTCATCCAATACAGATCTGCCTGTTTCGCGGGATCTTTGTCTGACAGGAGAGGTCGGTCTGTCAGGT
GAGATAAGACCTGTAACCAGAATTGAGCAGCGTATTATTGAAGCCGAAAAGCTGGGTTTTAAAACGATAATAATCCCTCG
TTATAACAAGGGGATTAACTTCAACAAGTTTGAGATACGTATACAGCAGTGCGGCAAAATAGAAGAGGCATTCCGGAGCT
TATTCAGCTGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(343-429)

AAA domain (AAA_25)

(72-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae R6

49.782

100

0.5
  radA Streptococcus pneumoniae Rx1

49.782

100

0.5
  radA Streptococcus pneumoniae D39

49.782

100

0.5
  radA Streptococcus pneumoniae TIGR4

49.782

100

0.5
  radA Streptococcus mitis NCTC 12261

49.563

100

0.498
  radA Streptococcus mitis SK321

49.234

100

0.493
  radA Bacillus subtilis subsp. subtilis str. 168

52.083

94.737

0.493