Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   NAF01_RS19145 Genome accession   NZ_CP098323
Coordinates   3768338..3770764 (-) Length   808 a.a.
NCBI ID   WP_226618296.1    Uniprot ID   -
Organism   Cytobacillus firmus strain PheN7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3763338..3775764
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NAF01_RS19120 (NAF01_19120) - 3765920..3767008 (-) 1089 WP_226618298.1 AI-2E family transporter -
  NAF01_RS19125 (NAF01_19125) - 3767131..3767265 (-) 135 WP_081757307.1 YrzQ family protein -
  NAF01_RS19130 (NAF01_19130) - 3767291..3767482 (-) 192 WP_035331236.1 hypothetical protein -
  NAF01_RS19135 (NAF01_19135) - 3767498..3767968 (-) 471 WP_163143571.1 PRC-barrel domain-containing protein -
  NAF01_RS19140 (NAF01_19140) - 3768090..3768239 (-) 150 WP_226618297.1 hypothetical protein -
  NAF01_RS19145 (NAF01_19145) recD2 3768338..3770764 (-) 2427 WP_226618296.1 ATP-dependent RecD-like DNA helicase Machinery gene
  NAF01_RS19150 (NAF01_19150) - 3770791..3771456 (-) 666 WP_222497696.1 tetratricopeptide repeat protein -
  NAF01_RS19155 (NAF01_19155) mnmA 3771573..3772688 (-) 1116 WP_250800978.1 tRNA 2-thiouridine(34) synthase MnmA -
  NAF01_RS19160 (NAF01_19160) - 3772748..3773890 (-) 1143 WP_250800979.1 cysteine desulfurase family protein -
  NAF01_RS19165 (NAF01_19165) - 3773958..3774377 (-) 420 WP_009333072.1 Rrf2 family transcriptional regulator -
  NAF01_RS19170 (NAF01_19170) - 3774377..3775063 (-) 687 WP_048010344.1 YitT family protein -

Sequence

Protein


Download         Length: 808 a.a.        Molecular weight: 91307.37 Da        Isoelectric Point: 4.9434

>NTDB_id=694916 NAF01_RS19145 WP_226618296.1 3768338..3770764(-) (recD2) [Cytobacillus firmus strain PheN7]
MEKQDSMDLFAEQGKFIKGRHLVTIFHNEQNLYTVVRIRVDETNDSYDEKEAVITGYLPKMHEHETYIFYGEFKDHPKFG
IQFHASHYRKDLPQTKQGVANYLSSELFKGIGKKTAEQIVETLGEDAITRILNQPSLLDNVPKLSPEKAKLLYDTLMEHQ
GLEQAMIALNQYGFGPQLSMRIYQVYKEMTIEVVQNNPYKLVEDIEGVGFGRADELGYQIGISGNHPDRIKAACLYILET
ESIQAGHVYIEAKPLLQSVKKLLEENKRDLIEYKDISNELIKLEEEGKIMAEGQKIFLPSLYFSEKGLVTNIKRILKQTQ
YDEQFPESEFLLALGNLEERLGVQYAPTQKEAIQTALMSPMLILTGGPGTGKTTVIKGIVELYAELHGCSLELKDYKKEE
PFPFLLAAPTGRAAKRMAESTGLPAVTIHRLLGWNGSEGFDRHEESPLEGRILIVDETSMVDVWLANQLFKALPENMQVI
LVGDEDQLPSVGPGQVLKDLLRSERIPTVRLTDIYRQAEGSSIIELAHEMKKGKLPANITAQQSDRSFIKCQPGQIADVV
EKVVLNAKKKGYSSKDIQVLAPMYRGPAGIDRLNEILQEILNPNPDGSRKELSFGDVKYRIGDKVLQLVNQPENNVFNGD
MGEIVSIFYAKENTEKQDMIVVSFDGAEATYTRQDLNQITHAYCCSVHKSQGSEFPIVIMPVVKSYYRMLRRNLLYTAIT
RSRQFLILCGEEDALKMGVERADEQARLTTLSEKLRDAILFNDETGLEDTTEASLTETLSLEEKLLQSDPMIGMGNITPY
DFLEKEYS

Nucleotide


Download         Length: 2427 bp        

>NTDB_id=694916 NAF01_RS19145 WP_226618296.1 3768338..3770764(-) (recD2) [Cytobacillus firmus strain PheN7]
ATGGAAAAACAGGATTCCATGGATCTTTTTGCCGAACAGGGGAAGTTCATAAAGGGCAGACATCTGGTCACAATCTTTCA
TAATGAGCAAAACTTATATACGGTTGTGCGCATTAGGGTTGATGAAACGAATGACTCTTATGATGAGAAAGAAGCGGTCA
TTACCGGCTATCTTCCAAAGATGCATGAGCATGAAACCTATATTTTTTATGGTGAATTCAAAGACCACCCTAAGTTCGGC
ATCCAATTCCATGCAAGCCATTACAGGAAAGATCTTCCCCAGACGAAACAAGGCGTAGCCAATTATTTATCAAGTGAATT
ATTTAAAGGGATTGGCAAGAAAACAGCCGAGCAAATCGTGGAGACACTTGGAGAAGATGCGATTACTCGTATTCTAAACC
AGCCGTCCCTCCTCGATAATGTTCCTAAGCTGTCACCTGAAAAAGCTAAATTGCTTTACGATACGCTGATGGAACACCAG
GGCCTTGAGCAAGCCATGATCGCTCTTAATCAATATGGGTTTGGACCGCAGCTTTCCATGAGAATTTATCAGGTGTATAA
AGAAATGACGATTGAAGTCGTTCAAAATAACCCTTATAAGCTGGTTGAGGATATAGAGGGGGTCGGCTTTGGCCGTGCTG
ACGAGCTGGGATATCAAATTGGCATATCAGGCAATCATCCTGACCGTATTAAAGCTGCCTGCCTCTACATACTTGAAACG
GAGAGTATTCAGGCAGGCCATGTTTATATTGAAGCAAAGCCTCTTCTGCAAAGTGTGAAGAAGCTGCTGGAAGAAAATAA
ACGTGATTTGATTGAATACAAGGATATATCCAATGAACTGATTAAGCTTGAAGAGGAAGGGAAGATCATGGCTGAAGGCC
AGAAAATTTTCCTTCCATCTCTTTATTTTTCCGAAAAAGGACTAGTAACCAATATTAAGCGGATCCTCAAGCAAACCCAG
TATGATGAACAGTTTCCGGAGTCGGAATTTCTTTTGGCCCTTGGAAATTTGGAGGAGCGCCTGGGTGTCCAATATGCCCC
AACTCAAAAGGAAGCCATTCAAACAGCTCTTATGTCTCCTATGCTGATATTGACCGGCGGGCCGGGGACAGGAAAAACAA
CCGTTATTAAGGGGATTGTTGAGTTATATGCCGAGCTGCATGGCTGCTCCCTGGAACTGAAAGATTATAAAAAGGAAGAG
CCCTTTCCCTTCCTGCTGGCAGCCCCTACAGGAAGGGCTGCAAAACGGATGGCAGAATCAACAGGGCTGCCAGCTGTAAC
GATTCACCGTCTTCTTGGATGGAATGGGTCTGAAGGATTTGACCGGCACGAGGAGAGTCCGCTGGAAGGCAGGATTTTAA
TTGTAGATGAAACATCAATGGTTGATGTTTGGCTTGCAAATCAGCTTTTCAAGGCTCTTCCTGAAAATATGCAAGTGATA
CTGGTTGGTGATGAAGACCAGCTGCCTTCAGTGGGTCCCGGCCAGGTTTTGAAGGATCTTCTGCGCTCAGAACGCATTCC
AACTGTCCGTTTAACAGATATATACAGGCAGGCTGAAGGGTCTTCAATTATTGAACTGGCACATGAAATGAAAAAAGGCA
AGCTTCCTGCGAACATCACTGCGCAGCAATCGGACCGTTCATTTATCAAATGCCAGCCGGGCCAAATTGCTGATGTTGTT
GAAAAGGTTGTCCTTAATGCCAAAAAGAAAGGTTATTCATCTAAAGATATTCAGGTGCTTGCCCCAATGTACCGCGGACC
TGCAGGCATCGACAGACTAAACGAAATACTGCAGGAAATACTGAATCCAAATCCCGATGGATCGAGGAAAGAGCTGTCCT
TTGGTGATGTGAAATACAGAATTGGCGATAAGGTCCTTCAGCTTGTCAACCAGCCTGAGAACAATGTTTTTAACGGGGAT
ATGGGTGAAATTGTTTCTATTTTTTACGCAAAGGAAAATACGGAAAAACAGGATATGATTGTCGTATCCTTTGATGGTGC
GGAAGCTACATACACAAGGCAGGATTTGAACCAGATCACTCATGCCTACTGCTGCTCTGTCCATAAATCGCAGGGAAGTG
AATTTCCGATTGTCATTATGCCTGTTGTTAAAAGCTATTACAGGATGCTGAGAAGAAATCTCCTTTATACCGCCATTACC
CGCAGCAGACAATTTTTGATATTGTGCGGCGAAGAAGATGCATTAAAAATGGGTGTGGAACGTGCGGATGAACAGGCCCG
CTTGACCACTCTTTCTGAAAAGCTGAGAGATGCAATCCTGTTTAATGATGAAACAGGGCTTGAAGATACAACTGAGGCTT
CTCTTACGGAAACACTTTCTCTCGAAGAAAAGCTTCTCCAATCCGATCCAATGATAGGAATGGGAAATATAACACCGTAT
GATTTTTTGGAAAAAGAATATAGCTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(158-249)

AAA domain (AAA_30)

(345-552)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(681-729)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(593-664)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

61.857

98.639

0.61