Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapF   Type   Regulator
Locus tag   O6U12_RS14330 Genome accession   NZ_CP114899
Coordinates   2672800..2673045 (+) Length   81 a.a.
NCBI ID   WP_242304596.1    Uniprot ID   -
Organism   Bacillus subtilis strain     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 2667800..2678045
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O6U12_RS14310 (O6U12_14310) ydfN 2667978..2668598 (-) 621 WP_024572374.1 nitroreductase family protein -
  O6U12_RS14315 (O6U12_14315) mneP 2669073..2669966 (+) 894 WP_015252717.1 manganese transporter MneP -
  O6U12_RS14320 (O6U12_14320) - 2670093..2671334 (+) 1242 Protein_2808 transposase -
  O6U12_RS14325 (O6U12_14325) - 2671600..2672325 (-) 726 WP_017695978.1 hypothetical protein -
  O6U12_RS14330 (O6U12_14330) rapF 2672800..2673045 (+) 246 WP_242304596.1 hypothetical protein Regulator
  O6U12_RS14335 (O6U12_14335) - 2673184..2673507 (+) 324 WP_052470593.1 hypothetical protein -
  O6U12_RS14340 (O6U12_14340) ydfL 2674070..2674882 (+) 813 WP_003234177.1 MerR family transcriptional regulator -
  O6U12_RS14345 (O6U12_14345) ydfK 2674972..2675661 (+) 690 WP_017695976.1 DUF554 domain-containing protein -
  O6U12_RS14350 (O6U12_14350) pleJ 2675719..2677890 (-) 2172 WP_041057132.1 MMPL family transporter -

Sequence

Protein


Download         Length: 81 a.a.        Molecular weight: 9892.43 Da        Isoelectric Point: 6.4529

>NTDB_id=694064 O6U12_RS14330 WP_242304596.1 2672800..2673045(+) (rapF) [Bacillus subtilis strain]
MKENQDAVVYYQLLKFRHELMLDYLHPDNVRDIEKQYEKLRELKNNNQNLTGMLEYYFYFFMGCTISGSMNWLLIKLLQT
S

Nucleotide


Download         Length: 246 bp        

>NTDB_id=694064 O6U12_RS14330 WP_242304596.1 2672800..2673045(+) (rapF) [Bacillus subtilis strain]
ATGAAGGAAAACCAAGACGCCGTCGTTTACTACCAACTATTAAAATTCCGTCATGAATTAATGTTGGACTATCTCCATCC
TGACAATGTCAGAGATATAGAGAAACAGTATGAAAAGCTAAGAGAACTGAAAAATAACAATCAGAACCTCACAGGAATGT
TAGAATACTATTTTTATTTTTTTATGGGATGTACTATTTCAGGCAGCATGAACTGGCTTCTAATTAAACTGTTACAGACA
AGCTGA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(1-23)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapF Bacillus subtilis subsp. subtilis str. 168

48.485

81.481

0.395