Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   NAL94_RS22780 Genome accession   NZ_CP098034
Coordinates   3112683..3113408 (+) Length   241 a.a.
NCBI ID   WP_042522603.1    Uniprot ID   A0A7Y0QW32
Organism   Vibrio alginolyticus strain E110     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3107683..3118408
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NAL94_RS22765 (NAL94_22770) - 3108816..3111137 (+) 2322 WP_042522604.1 Tex family protein -
  NAL94_RS22770 (NAL94_22775) - 3111242..3111706 (-) 465 WP_005379316.1 hypothetical protein -
  NAL94_RS22775 (NAL94_22780) bioH 3111831..3112598 (-) 768 WP_005384724.1 pimeloyl-ACP methyl ester esterase BioH -
  NAL94_RS22780 (NAL94_22785) comF 3112683..3113408 (+) 726 WP_042522603.1 amidophosphoribosyltransferase Machinery gene
  NAL94_RS22785 (NAL94_22790) nfuA 3113506..3114090 (+) 585 WP_005379313.1 Fe-S biogenesis protein NfuA -
  NAL94_RS22790 (NAL94_22795) nudE 3114267..3114836 (+) 570 WP_042522602.1 ADP compounds hydrolase NudE -
  NAL94_RS22795 (NAL94_22800) cysQ 3114881..3115708 (+) 828 WP_005379308.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  NAL94_RS22800 (NAL94_22805) - 3116011..3116772 (-) 762 WP_017635007.1 type II secretion system protein N -
  NAL94_RS22805 (NAL94_22810) - 3116774..3117265 (-) 492 WP_005383002.1 type II secretion system protein M -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27767.01 Da        Isoelectric Point: 9.5795

>NTDB_id=693709 NAL94_RS22780 WP_042522603.1 3112683..3113408(+) (comF) [Vibrio alginolyticus strain E110]
MLSHHWQNIMHRVLSSQCGLCRFPIQTPSHTNTLRWCEHCLKYLTPVKRCQRCGLSLQKEEMSTDSICGECLSKPPPWQR
LYTLGDYDFPLSREVQRFKDHGESWHVKALTEQLAQRITTPAPIITSVPLHWQRYLRRGFNQSDVLARHLAKQLQTNFDA
KVFRRVKLAQSQRGNTKTSREQNLKGAFILNKQPHSSHVAIVDDVVTTGSTVRQLCHLLLEVGVESIDIYCICRTPAPRS
L

Nucleotide


Download         Length: 726 bp        

>NTDB_id=693709 NAL94_RS22780 WP_042522603.1 3112683..3113408(+) (comF) [Vibrio alginolyticus strain E110]
ATGTTATCTCATCACTGGCAAAACATCATGCATCGCGTATTGAGCAGTCAATGCGGCCTGTGTCGGTTCCCTATTCAAAC
ACCAAGCCACACAAATACTCTGCGCTGGTGCGAGCACTGTTTAAAATACCTAACTCCGGTAAAACGATGTCAACGCTGCG
GTTTATCATTACAGAAAGAAGAAATGAGTACGGATAGTATTTGTGGTGAATGTCTTTCAAAGCCACCGCCATGGCAAAGG
CTATACACGTTAGGCGATTACGACTTTCCCCTTTCACGGGAAGTACAACGCTTTAAAGATCACGGAGAGTCTTGGCATGT
AAAAGCATTAACCGAGCAACTGGCACAGCGCATCACCACGCCAGCTCCAATCATTACCAGTGTGCCATTGCACTGGCAGC
GTTACCTGCGCCGGGGTTTTAATCAAAGTGATGTTTTAGCCCGACACCTCGCCAAGCAATTGCAGACTAATTTTGATGCG
AAGGTCTTTCGTCGAGTAAAGCTCGCCCAATCACAGCGTGGTAATACCAAAACAAGCCGTGAACAAAACTTAAAAGGCGC
GTTTATTCTCAATAAGCAACCTCACTCTTCCCATGTTGCCATCGTCGATGATGTAGTCACCACAGGCAGTACCGTCCGAC
AATTATGTCATTTACTACTTGAAGTTGGCGTAGAAAGCATCGATATTTACTGCATCTGCAGAACACCTGCTCCTCGTTCT
CTCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(145-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7Y0QW32

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

71.369

100

0.714
  comF Vibrio cholerae strain A1552

47.5

99.585

0.473