Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   NAF16_RS00210 Genome accession   NZ_CP098021
Coordinates   44712..45347 (-) Length   211 a.a.
NCBI ID   WP_390369985.1    Uniprot ID   -
Organism   Vibrio fluvialis strain V13     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 39712..50347
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NAF16_RS00180 (NAF16_00180) gspL 39964..41175 (+) 1212 WP_100267570.1 type II secretion system protein GspL -
  NAF16_RS00185 (NAF16_00185) - 41185..41691 (+) 507 WP_020329336.1 type II secretion system protein M -
  NAF16_RS00190 (NAF16_00190) - 41691..42449 (+) 759 WP_222725216.1 type II secretion system protein N -
  NAF16_RS00195 (NAF16_00195) cysQ 42479..43306 (-) 828 WP_020429367.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  NAF16_RS00200 (NAF16_00200) nudE 43330..43878 (-) 549 WP_047459232.1 ADP compounds hydrolase NudE -
  NAF16_RS00205 (NAF16_00205) nfuA 44024..44611 (-) 588 WP_024373335.1 Fe-S biogenesis protein NfuA -
  NAF16_RS00210 (NAF16_00210) comF 44712..45347 (-) 636 WP_390369985.1 phosphoribosyltransferase family protein Machinery gene
  NAF16_RS00215 (NAF16_00215) bioH 45500..46270 (+) 771 WP_222817340.1 pimeloyl-ACP methyl ester esterase BioH -
  NAF16_RS00220 (NAF16_00220) - 46399..46869 (+) 471 WP_140229734.1 ATP-dependent Lon protease -
  NAF16_RS00225 (NAF16_00225) - 46951..49260 (-) 2310 WP_024373333.1 Tex family protein -
  NAF16_RS00230 (NAF16_00230) - 49316..49978 (-) 663 WP_047459239.1 hypothetical protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23843.33 Da        Isoelectric Point: 8.4996

>NTDB_id=693531 NAF16_RS00210 WP_390369985.1 44712..45347(-) (comF) [Vibrio fluvialis strain V13]
MPLESHNTQSLCGACLDWYAPTTRCARCGLPCETATEQCGQCLTSPPPWHKLYCLGDYRFPLSQSVHQLKYQRQFWQAQP
LAGLLAPRIVSPAPLVTCVPLHWRRHAWRGFNQSDVLARQLAQQLGSQYQPRLFSRRLATPPQQGLNKEQRRRNLNQAFV
LNSAPSHRHIAIVDDVVTTGSTVRQLCNLLLDVGVESLDIYCICRTPEPGD

Nucleotide


Download         Length: 636 bp        

>NTDB_id=693531 NAF16_RS00210 WP_390369985.1 44712..45347(-) (comF) [Vibrio fluvialis strain V13]
TTGCCCCTTGAATCGCATAACACGCAGAGCTTGTGTGGCGCATGCCTCGACTGGTACGCACCAACCACGCGTTGCGCTCG
CTGCGGCCTGCCTTGTGAAACCGCCACCGAGCAGTGTGGCCAATGCCTGACATCGCCGCCGCCATGGCACAAGCTCTATT
GTTTGGGCGATTACCGCTTTCCACTCAGTCAGAGCGTGCATCAGCTCAAATATCAGCGCCAGTTCTGGCAAGCGCAGCCG
CTGGCCGGATTGTTAGCCCCAAGAATTGTATCGCCCGCCCCACTGGTGACCTGCGTACCGCTGCACTGGCGCCGCCATGC
CTGGCGCGGTTTCAATCAAAGTGATGTTTTGGCACGTCAACTTGCGCAACAACTCGGCAGCCAATACCAGCCTCGGCTGT
TTTCCCGTCGCCTGGCTACCCCGCCGCAGCAAGGCCTGAACAAAGAGCAGCGCCGGCGGAATCTCAACCAAGCTTTTGTC
TTAAACAGTGCGCCGAGCCACAGACATATCGCGATCGTTGATGATGTCGTCACCACAGGCAGTACGGTGCGACAATTATG
CAATTTACTGCTTGATGTAGGCGTCGAAAGCCTTGATATTTACTGCATATGCCGCACTCCTGAACCGGGTGACTGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(117-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

64.929

100

0.649
  comF Vibrio campbellii strain DS40M4

51.923

98.578

0.512