Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   NAA64_RS06350 Genome accession   NZ_CP097887
Coordinates   1314110..1316503 (+) Length   797 a.a.
NCBI ID   WP_167867875.1    Uniprot ID   -
Organism   Staphylococcus arlettae strain SA283     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1309110..1321503
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NAA64_RS06330 (NAA64_06330) sal 1309217..1310851 (+) 1635 WP_002510460.1 Sal family ABC-F type ribosomal protection protein -
  NAA64_RS06335 (NAA64_06335) - 1310913..1312055 (+) 1143 WP_002510461.1 cysteine desulfurase family protein -
  NAA64_RS06340 (NAA64_06340) mnmA 1312057..1313169 (+) 1113 WP_167867874.1 tRNA 2-thiouridine(34) synthase MnmA -
  NAA64_RS06345 (NAA64_06345) - 1313441..1314106 (+) 666 WP_021459900.1 tetratricopeptide repeat protein -
  NAA64_RS06350 (NAA64_06350) recD2 1314110..1316503 (+) 2394 WP_167867875.1 ATP-dependent RecD-like DNA helicase Machinery gene
  NAA64_RS06355 (NAA64_06355) alaS 1316825..1319455 (+) 2631 WP_002510465.1 alanine--tRNA ligase -
  NAA64_RS06360 (NAA64_06360) - 1319520..1319783 (+) 264 WP_002510466.1 IreB family regulatory phosphoprotein -
  NAA64_RS06365 (NAA64_06365) ruvX 1319786..1320214 (+) 429 WP_103387851.1 Holliday junction resolvase RuvX -
  NAA64_RS06370 (NAA64_06370) - 1320231..1320563 (+) 333 WP_002510468.1 DUF1292 domain-containing protein -

Sequence

Protein


Download         Length: 797 a.a.        Molecular weight: 89356.98 Da        Isoelectric Point: 4.4049

>NTDB_id=693351 NAA64_RS06350 WP_167867875.1 1314110..1316503(+) (recD2) [Staphylococcus arlettae strain SA283]
MADPTLFNYSMIKGTVDAILFQNKDNFYTVLKVDTIETNESLDSMPTVVGFFPEIVEGDVYTFKGQIATHPKYGKQLKAD
IFEKELPQTKEAIISYLSSDLFKGIGKKTAQNIVNTLGENAIADILNDSQVLSKVPSLSASKQKQIAEQIASNQETEQII
IRLHDLGFGPKLAMNIYQAYLGETLNVVEKTPYQLVYDVKGIGFNKADMLAKNIGIQYNDPERLKAGILYILEEECIKQG
HTYLPTQFVLELVQDILSNPPSEVIDQSILANQVEQLVNEDKLVQQEAELAIPSLYYSEIKSVQNLYRNFTYTKKLKDIE
MSDLLLEIGNIEDQNTVSYAESQKEALQTAINSKVMLLTGGPGTGKTTVIKGIVELYAEIHGLSLDYDDYKEDDYPIVLG
APTGRASKRLAEATGLEAMTIHRLIGWNQETQPEDILDNEINAKLIIIDEMSMVDTWLFHQFMSAVPLDAQVILVGDEDQ
LPSVGPGQVFKDLIDSGVIPRVNLTEVYRQQDGSSIIELAHKIKLGLPIDIIERFHDRNFINCETEQIPQVVEKVVASAV
NKGYDMSDIQVLAPMYKGSAGIKRLNQVLQDILNPKIKDTREIAFGEVLFRKGDKVLQLVNRPNDNIFNGDIGVIVGIFW
AKENALDKDVLVVDFEGNEITFTRQDLMELTHAYCTSIHKSQGSEFPIVIMPMVKQYFRMLQKPILYTGLTRAKQSLVFL
GDPNAFTIGLKTNGQVRMTQLCDLLQAYFDSDSGKDDDQEDINQQLNSTVTLTESTIYQIDPMINMGQLSPYDFVND

Nucleotide


Download         Length: 2394 bp        

>NTDB_id=693351 NAA64_RS06350 WP_167867875.1 1314110..1316503(+) (recD2) [Staphylococcus arlettae strain SA283]
ATGGCAGATCCTACACTGTTTAACTATTCAATGATTAAAGGTACAGTAGATGCTATTTTGTTTCAAAACAAAGATAATTT
TTATACTGTATTAAAAGTTGATACAATTGAAACCAATGAATCATTAGATAGTATGCCTACAGTTGTAGGGTTCTTTCCTG
AAATTGTGGAAGGTGATGTCTATACATTTAAAGGGCAAATAGCTACGCATCCTAAATATGGTAAACAATTAAAAGCAGAT
ATTTTTGAAAAGGAATTACCACAAACGAAGGAAGCAATTATCAGTTATTTGTCTAGTGACTTATTCAAAGGTATTGGTAA
AAAGACGGCTCAAAATATTGTTAATACACTCGGTGAAAATGCCATTGCTGATATATTAAACGATTCACAAGTTTTAAGTA
AGGTGCCGAGTTTATCTGCAAGCAAACAAAAACAAATTGCAGAACAAATTGCTAGCAACCAAGAAACAGAACAAATAATA
ATTAGATTACATGACTTAGGCTTTGGGCCGAAGTTAGCAATGAATATATACCAAGCTTATTTAGGTGAAACACTCAATGT
AGTAGAAAAGACACCTTACCAATTAGTATATGATGTCAAGGGTATTGGTTTTAATAAAGCTGATATGTTAGCCAAAAATA
TCGGTATTCAATATAACGATCCAGAACGTTTAAAAGCAGGAATACTCTATATACTAGAAGAAGAGTGTATTAAACAAGGA
CATACCTATTTACCTACGCAATTTGTTTTAGAATTGGTACAGGATATTTTATCTAATCCTCCATCTGAAGTCATAGATCA
ATCGATATTAGCTAATCAAGTTGAACAGCTAGTCAATGAAGATAAATTAGTACAGCAAGAAGCTGAATTAGCTATTCCAA
GTTTGTATTATTCAGAAATAAAGAGTGTCCAAAATTTATATCGCAATTTCACGTACACTAAAAAATTGAAAGATATTGAA
ATGTCCGACTTATTATTAGAAATTGGTAATATAGAGGACCAAAATACAGTCAGTTATGCTGAATCACAAAAAGAAGCACT
ACAAACCGCTATTAATTCAAAAGTGATGTTATTAACAGGAGGACCTGGTACAGGGAAAACAACTGTAATTAAAGGCATCG
TAGAATTGTATGCTGAAATACATGGCCTTTCTTTAGATTATGACGATTATAAAGAAGATGATTATCCTATTGTGTTAGGT
GCTCCGACAGGGCGAGCGTCTAAACGATTAGCTGAAGCTACAGGATTAGAAGCTATGACCATTCACCGACTTATTGGTTG
GAATCAAGAAACACAACCTGAAGATATTTTAGATAATGAAATTAATGCTAAATTGATTATTATAGATGAGATGTCGATGG
TAGATACTTGGTTATTTCATCAATTTATGAGTGCAGTACCGTTAGATGCACAAGTCATTTTAGTTGGTGATGAGGATCAA
TTACCGTCAGTTGGTCCCGGACAAGTCTTTAAAGATTTAATTGACTCTGGAGTTATTCCTAGAGTTAATTTAACTGAAGT
ATATAGACAGCAAGATGGATCTAGTATTATAGAGTTAGCGCATAAAATTAAATTGGGGTTACCAATAGATATTATCGAGC
GTTTTCATGACCGTAATTTTATCAACTGTGAAACAGAACAAATACCACAAGTTGTTGAAAAAGTTGTAGCTAGTGCTGTT
AACAAAGGGTATGATATGAGTGATATTCAAGTATTAGCACCTATGTACAAAGGTTCTGCAGGCATTAAGCGATTAAATCA
AGTATTACAAGATATATTAAATCCAAAAATAAAAGATACGCGTGAAATTGCATTTGGTGAAGTTTTATTTAGAAAAGGCG
ATAAAGTATTGCAATTGGTTAATAGACCAAATGATAATATTTTTAATGGAGATATCGGAGTAATTGTAGGTATTTTTTGG
GCTAAAGAAAATGCCTTAGATAAAGATGTATTAGTGGTTGATTTTGAAGGTAATGAGATAACATTTACACGACAAGATTT
AATGGAATTAACACATGCTTATTGTACATCTATCCATAAATCACAAGGTTCTGAATTTCCAATTGTCATTATGCCTATGG
TAAAACAGTATTTCAGAATGTTACAAAAGCCTATTTTGTATACAGGTCTGACACGTGCAAAACAATCATTGGTCTTTTTA
GGTGATCCCAATGCATTTACAATTGGTTTAAAGACAAATGGTCAAGTAAGAATGACTCAATTATGTGACTTACTGCAAGC
TTACTTTGATAGTGACTCAGGTAAAGATGATGACCAGGAAGATATTAACCAGCAACTTAATAGTACAGTTACTTTGACTG
AGAGTACCATATATCAAATTGACCCAATGATTAATATGGGGCAATTATCACCATATGACTTCGTAAATGATTGA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(672-719)

AAA domain (AAA_30)

(339-545)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(585-655)

Helix-hairpin-helix containing domain (HHH_RecD2)

(153-243)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

50.44

99.749

0.503