Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   M8C01_RS00630 Genome accession   NZ_CP097858
Coordinates   141820..142545 (-) Length   241 a.a.
NCBI ID   WP_264404087.1    Uniprot ID   -
Organism   Vibrio owensii strain GL-605     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 136820..147545
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M8C01_RS00605 - 137984..138475 (+) 492 WP_009707965.1 type II secretion system protein M -
  M8C01_RS00610 - 138477..139238 (+) 762 WP_264404086.1 type II secretion system protein N -
  M8C01_RS00615 cysQ 139528..140355 (-) 828 WP_132698487.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  M8C01_RS00620 nudE 140400..140963 (-) 564 WP_005434477.1 ADP compounds hydrolase NudE -
  M8C01_RS00625 nfuA 141138..141722 (-) 585 WP_005434470.1 Fe-S biogenesis protein NfuA -
  M8C01_RS00630 comF 141820..142545 (-) 726 WP_264404087.1 phosphoribosyltransferase family protein Machinery gene
  M8C01_RS00635 bioH 142630..143394 (+) 765 WP_264404088.1 pimeloyl-ACP methyl ester esterase BioH -
  M8C01_RS00640 - 143530..143982 (+) 453 WP_264404089.1 ATP-dependent Lon protease -
  M8C01_RS00645 - 144107..146428 (-) 2322 WP_264404090.1 Tex family protein -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27683.96 Da        Isoelectric Point: 8.3231

>NTDB_id=693094 M8C01_RS00630 WP_264404087.1 141820..142545(-) (comF) [Vibrio owensii strain GL-605]
MLSHQWQNIMHRVLSSQCGLCRFPISAEQKPNPMRWCDCCFEHLTPIKRCTRCGLKMTEEESQTSTECGECLKEPPPWQR
LYTLGDYDFPLSNQVQRLKDHGEAWHVGALTQLLAKRIEHPARVITCVPIHWQRYLKRGFNQSHILAKHLAHHLDVRYED
KVFKRVKSVESQRGIKKASREQNLKGAFTLQGEVNFSHIAIVDDVVTTGSTVRQLCHLLLEVGVESIDIYCICRTPAPGS
L

Nucleotide


Download         Length: 726 bp        

>NTDB_id=693094 M8C01_RS00630 WP_264404087.1 141820..142545(-) (comF) [Vibrio owensii strain GL-605]
ATGTTATCTCATCAATGGCAAAACATCATGCACCGCGTACTTAGCAGCCAATGTGGTTTGTGTCGATTTCCGATCTCCGC
TGAACAGAAACCAAACCCAATGCGTTGGTGTGACTGTTGTTTTGAGCACCTCACGCCCATCAAACGCTGCACTCGTTGTG
GTTTAAAAATGACAGAAGAGGAATCACAAACCTCAACAGAGTGCGGTGAGTGCCTGAAAGAGCCACCTCCTTGGCAACGT
TTATATACGTTAGGGGATTATGATTTCCCCCTGTCTAACCAAGTGCAACGCCTTAAAGATCATGGCGAGGCATGGCATGT
CGGCGCACTCACTCAATTGCTGGCCAAACGAATTGAACACCCAGCTCGAGTGATTACTTGTGTACCAATACATTGGCAAC
GTTATTTAAAACGAGGATTTAACCAAAGCCATATCCTAGCCAAACACCTGGCCCACCATTTAGATGTGCGATATGAAGAT
AAGGTATTTAAACGCGTTAAAAGCGTCGAATCGCAACGAGGAATCAAAAAAGCCAGTCGTGAACAGAATTTAAAAGGGGC
ATTTACCCTACAAGGTGAGGTGAACTTTTCCCACATCGCGATTGTGGATGATGTGGTTACAACAGGTAGTACGGTCCGAC
AATTATGTCATTTACTACTTGAAGTTGGCGTAGAAAGCATCGATATTTACTGCATCTGCAGAACTCCTGCCCCAGGCTCA
CTCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(144-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

87.137

100

0.871
  comF Vibrio cholerae strain A1552

46.639

98.755

0.461