Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   N6H00_RS14660 Genome accession   NZ_CP114036
Coordinates   3507978..3510221 (-) Length   747 a.a.
NCBI ID   WP_268972120.1    Uniprot ID   -
Organism   Streptomyces sp. S465     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3502978..3515221
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N6H00_RS14645 (N6H00_14645) - 3503302..3503514 (+) 213 Protein_2908 heavy-metal-associated domain-containing protein -
  N6H00_RS14650 (N6H00_14650) - 3503596..3505908 (+) 2313 WP_268972118.1 heavy metal translocating P-type ATPase -
  N6H00_RS14655 (N6H00_14655) - 3506537..3507826 (-) 1290 WP_268972119.1 citrate synthase -
  N6H00_RS14660 (N6H00_14660) recD/recD2/recDB 3507978..3510221 (-) 2244 WP_268972120.1 ATP-dependent RecD-like DNA helicase Machinery gene
  N6H00_RS14665 (N6H00_14665) - 3510409..3511425 (+) 1017 WP_268972121.1 LacI family DNA-binding transcriptional regulator -
  N6H00_RS14670 (N6H00_14670) - 3511422..3513002 (+) 1581 WP_268972123.1 sugar ABC transporter ATP-binding protein -
  N6H00_RS14675 (N6H00_14675) - 3512992..3514941 (+) 1950 WP_268972125.1 substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 747 a.a.        Molecular weight: 81069.62 Da        Isoelectric Point: 6.6514

>NTDB_id=692136 N6H00_RS14660 WP_268972120.1 3507978..3510221(-) (recD/recD2/recDB) [Streptomyces sp. S465]
MLKLAVVEGVLERITYANEENGYTVARVDTGRGSGDLLTVVGALLGAQPGESLRMEGRWGSHPQYGKQFTVENYQTVLPA
TVQGIRRYLGSGLIKGIGPRIADRITEHFGIDTLDVIEERPERLIEVPGLGPKRTKMIAAAWEEQKAIKEVMVFLQGVGV
STSIAVRIYKKYGDASISVVKNEPYRLAADVWGIGFLTADKIAQSVGIPHDSPDRVKAGLQYALSQSADQGHCYLPEERL
IADAVKLLQVDTGLVIDCLGELAAEEEGVVREPVPGPEDGEPVSAVYLVPFHRAEISLAGQVLRLLRTEEDRLPAFRDVD
WDKALGWLARRTGADLAPEQSQAVRLALTEKVAVLTGGPGCGKSFTVRSVVELARAKKAKVVLAAPTGRAAKRLSELTGA
EASTVHRLLELKPGGDAAYDRDRPLDADLVVVDEASMLDLLLANKLVKAVPPGAHLLFVGDVDQLPSVGAGEVLRDLLAP
GSPVPAVRLTRIFRQAQQSGVVTNAHRINEGVPPVTQGLSDFFLFVEDDTEQAGRLTVDVAARRIPAKFGLDPRRDVQVL
APMHRGPAGAGTLNGLLQQAITPARPDLAERRFGGRVFRVGDKVTQIRNNYEKGANGVFNGTVGVVTSLDNDEQRLTVRT
DEDEEVPYDFDELDELAHAYAVTIHRSQGSEYPAVVIPVTTGAWMMLQRNLLYTAVTRAKRLVVLVGSRRALGQAVRTVS
AGRRCTALDHRLGGDVRVERVRWVSER

Nucleotide


Download         Length: 2244 bp        

>NTDB_id=692136 N6H00_RS14660 WP_268972120.1 3507978..3510221(-) (recD/recD2/recDB) [Streptomyces sp. S465]
ATGCTCAAACTCGCGGTGGTCGAAGGGGTCCTGGAGCGGATCACCTACGCCAATGAGGAGAACGGCTATACGGTCGCGCG
GGTCGACACCGGCCGTGGCTCCGGTGATCTGCTGACCGTCGTCGGTGCGCTGCTGGGGGCCCAGCCCGGCGAGTCGCTGC
GGATGGAGGGCCGCTGGGGTTCCCACCCGCAGTACGGGAAGCAGTTCACCGTCGAGAACTACCAGACCGTCCTCCCCGCC
ACCGTCCAGGGCATCCGGCGCTATCTCGGCTCGGGCCTGATCAAGGGCATCGGCCCCCGGATCGCCGACCGGATCACCGA
GCACTTCGGCATCGACACCCTCGACGTCATCGAGGAGCGGCCCGAGCGGCTCATCGAGGTCCCCGGCCTCGGCCCCAAGC
GCACCAAGATGATCGCCGCCGCCTGGGAGGAGCAGAAGGCCATCAAGGAGGTGATGGTTTTCCTCCAGGGGGTGGGCGTC
TCCACCTCCATCGCGGTGCGGATCTACAAGAAGTACGGCGACGCGTCCATCTCGGTCGTGAAGAACGAGCCGTACCGGCT
GGCGGCCGACGTCTGGGGCATCGGCTTCCTCACCGCCGACAAGATCGCCCAGTCGGTCGGCATTCCGCACGACAGCCCCG
ACCGGGTGAAGGCCGGCCTTCAGTACGCGCTGTCCCAGTCCGCCGACCAGGGCCACTGCTATCTCCCCGAGGAGCGGCTC
ATCGCGGACGCCGTGAAGTTGCTCCAGGTGGACACCGGCCTGGTCATCGACTGTCTGGGCGAGCTCGCGGCCGAGGAGGA
GGGCGTGGTGCGCGAGCCGGTCCCCGGCCCGGAGGACGGCGAGCCGGTCTCCGCCGTCTATCTGGTGCCCTTCCACCGCG
CCGAGATCTCCCTCGCGGGCCAGGTGCTGCGGCTGCTGCGCACCGAGGAGGACCGGCTGCCCGCCTTCCGGGACGTGGAC
TGGGACAAGGCGCTGGGCTGGCTGGCCCGCCGCACCGGGGCCGATCTGGCGCCCGAGCAGAGCCAGGCGGTGCGGCTCGC
GCTGACCGAGAAGGTCGCGGTGCTGACCGGTGGGCCGGGGTGCGGCAAGTCCTTCACCGTGCGGTCCGTGGTGGAGCTGG
CCCGTGCCAAGAAGGCCAAGGTGGTGCTCGCGGCGCCCACCGGCCGGGCCGCCAAGCGGCTGTCCGAGCTGACCGGCGCC
GAGGCGTCCACCGTCCACCGGCTGCTGGAGCTCAAGCCCGGCGGGGACGCGGCGTACGACCGGGACCGCCCGCTCGACGC
CGATCTGGTGGTGGTCGACGAGGCGTCGATGCTTGATCTGCTGCTGGCCAACAAGCTGGTCAAGGCGGTCCCGCCGGGTG
CCCATCTGCTCTTCGTCGGCGATGTGGACCAGCTGCCCAGCGTGGGCGCCGGGGAGGTGCTGCGCGATCTGCTGGCGCCC
GGCAGCCCCGTCCCGGCGGTGCGGCTGACCCGGATCTTCCGCCAGGCCCAGCAGTCCGGGGTGGTCACCAACGCCCACCG
GATCAACGAGGGGGTGCCGCCGGTCACTCAGGGCCTGTCGGATTTCTTCCTCTTCGTCGAGGACGACACCGAGCAGGCCG
GGCGGCTCACGGTCGATGTCGCGGCCCGCCGCATCCCCGCCAAGTTCGGCCTCGACCCCCGCCGTGACGTGCAGGTCCTG
GCCCCGATGCACCGGGGCCCGGCGGGCGCGGGCACGCTCAACGGACTGCTTCAGCAGGCCATCACCCCGGCCCGCCCGGA
CCTTGCCGAGCGCCGCTTCGGAGGTCGCGTCTTCCGGGTCGGCGACAAGGTGACCCAGATCCGCAACAATTATGAGAAAG
GGGCCAATGGGGTCTTCAACGGCACGGTTGGCGTCGTCACCTCACTCGACAACGATGAGCAGCGGCTGACCGTGCGGACG
GACGAGGACGAGGAGGTACCGTACGACTTCGACGAGCTGGACGAGTTGGCTCATGCCTATGCGGTGACCATCCACCGGTC
ACAGGGCAGTGAGTACCCGGCCGTCGTGATCCCGGTGACCACCGGGGCCTGGATGATGTTGCAGCGCAATCTCCTGTACA
CGGCCGTGACCCGCGCCAAGCGCCTCGTGGTGCTGGTCGGTTCGCGCCGGGCGCTGGGGCAGGCGGTGCGCACCGTCTCG
GCGGGGAGGCGCTGTACCGCGCTGGATCACCGGCTCGGCGGCGATGTGCGAGTCGAGCGTGTCAGATGGGTTTCCGAACG
GTGA

Domains

Predicted by InterProScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(658-706)

AAA domain (AAA_30)

(336-514)

Helix-hairpin-helix domain (HHH_5)

(94-143)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(573-639)

Helix-hairpin-helix containing domain (HHH_RecD2)

(144-234)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

35.233

100

0.364