Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   MF620_RS11940 Genome accession   NZ_CP097766
Coordinates   2706912..2708681 (+) Length   589 a.a.
NCBI ID   WP_090891471.1    Uniprot ID   -
Organism   Paenibacillus polymyxa strain R 6.14     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2701912..2713681
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MF620_RS11920 (MF620_002378) - 2702919..2703641 (-) 723 WP_250264500.1 LysR family transcriptional regulator -
  MF620_RS25375 - 2703634..2703684 (+) 51 Protein_2290 hypothetical protein -
  MF620_RS11925 (MF620_002379) - 2704211..2705884 (+) 1674 WP_107735199.1 RICIN domain-containing protein -
  MF620_RS11930 (MF620_002380) - 2706052..2706267 (+) 216 Protein_2292 nitronate monooxygenase -
  MF620_RS11935 (MF620_002381) - 2706425..2706832 (+) 408 WP_045245283.1 MarR family winged helix-turn-helix transcriptional regulator -
  MF620_RS11940 (MF620_002382) rcrP 2706912..2708681 (+) 1770 WP_090891471.1 ABC transporter ATP-binding protein Regulator
  MF620_RS11945 (MF620_002383) rcrQ 2708668..2710518 (+) 1851 WP_019687274.1 ABC transporter ATP-binding protein Regulator
  MF620_RS11950 (MF620_002384) - 2710726..2711493 (+) 768 WP_113050176.1 IclR family transcriptional regulator -
  MF620_RS11955 (MF620_002385) - 2711680..2712369 (+) 690 WP_113050177.1 type 1 glutamine amidotransferase -

Sequence

Protein


Download         Length: 589 a.a.        Molecular weight: 65088.49 Da        Isoelectric Point: 8.1887

>NTDB_id=692070 MF620_RS11940 WP_090891471.1 2706912..2708681(+) (rcrP) [Paenibacillus polymyxa strain R 6.14]
MLKIFKYLKKNEWMFVLCSLAFIVVQVWLDLKLPDYMAEITTKLQTAGTPMSELLIPGIYMLLCAVGSMIASIIVGYFAA
KVAAGLAMRLRAMVFDKALSFSMEEMNSFSTASLITRSTNDVTQIQTVVALGLQVIIKAPILAVWAIAKIADKNWQWTAS
TGVAVAVLILMLSVIVIFALPSFQKIQRLTDNLNRVTREHLTGLRVVRAYNADQYQEEKFGQANTELMNTNLFANRLMTM
VGPGMTFIMSGLSVSIYWIGAYLINGTAVPDRISLFSNMVVFSSYAVQVVMAFMMVSMIFFLMPRASISAKRIMEVLNTE
SRIIDGHETAGEEGVMGQVEFRNVSFKYPDAEEPVLRNISFTAKQGETVAFIGATGSGKTSVINLISRFYDVTEGEVLVD
GVNVRNYKQQTLHNKIGYVPQRAVLFSGTVASNVSYGDNGRAEASEKLVKTAVGIAQGTEFVEKMDGQYQGRISQGGANV
SGGQKQRLSIARAIYRQPEIYIFDDSFSALDYRTDRILRSALKQETGHATTLIVAQRIGTIKDADRIIVLDQGEIVGNGT
HKELMANCSTYQEIAYSQLSKEELVHGQE

Nucleotide


Download         Length: 1770 bp        

>NTDB_id=692070 MF620_RS11940 WP_090891471.1 2706912..2708681(+) (rcrP) [Paenibacillus polymyxa strain R 6.14]
ATGCTGAAGATATTCAAATATCTCAAGAAAAATGAATGGATGTTCGTGCTTTGCAGCTTGGCCTTCATCGTTGTGCAGGT
GTGGCTGGATTTGAAGTTGCCTGATTATATGGCCGAAATTACAACCAAGCTGCAAACTGCAGGAACGCCGATGTCGGAAC
TGCTGATTCCTGGTATTTATATGCTGTTATGTGCTGTCGGGAGTATGATTGCATCTATTATTGTCGGCTATTTTGCGGCA
AAGGTCGCGGCAGGGCTGGCCATGCGCCTGCGTGCGATGGTCTTTGACAAGGCCTTATCTTTTTCGATGGAAGAGATGAA
CAGCTTTTCAACAGCCAGCCTTATCACCCGTTCCACGAACGATGTTACCCAAATTCAAACGGTGGTTGCGCTGGGGTTGC
AGGTGATCATCAAGGCGCCGATTCTGGCCGTGTGGGCCATTGCAAAGATCGCAGATAAAAACTGGCAGTGGACCGCCTCT
ACAGGAGTGGCTGTGGCTGTCCTGATCCTGATGCTGAGTGTCATTGTTATTTTTGCTCTCCCCAGTTTCCAAAAAATCCA
ACGTCTCACTGATAATCTGAACAGGGTAACACGTGAGCATCTGACGGGGCTTCGCGTAGTGCGTGCTTATAATGCAGATC
AGTATCAGGAGGAGAAGTTTGGGCAGGCCAATACCGAATTGATGAATACAAACCTGTTTGCGAACCGGTTAATGACAATG
GTTGGTCCGGGCATGACCTTTATTATGTCGGGTCTGAGTGTCTCGATCTATTGGATTGGCGCTTACCTGATTAACGGAAC
GGCCGTGCCGGACCGCATTTCGCTATTCTCTAATATGGTCGTATTCTCATCTTATGCGGTGCAGGTGGTCATGGCCTTTA
TGATGGTAAGTATGATATTCTTCCTGATGCCTCGAGCTTCGATTTCTGCCAAACGGATTATGGAGGTATTGAATACCGAA
TCCCGCATCATTGACGGGCATGAGACAGCTGGAGAAGAGGGCGTTATGGGTCAGGTGGAATTCCGTAATGTCAGCTTTAA
ATATCCGGATGCGGAGGAGCCTGTGCTTCGCAACATTAGCTTTACGGCAAAACAAGGCGAGACGGTTGCCTTTATTGGCG
CAACAGGCAGCGGTAAAACCAGCGTAATCAATCTGATTTCTCGTTTCTACGATGTGACTGAGGGAGAGGTACTCGTGGAT
GGTGTGAATGTCAGAAACTATAAGCAGCAGACACTCCATAACAAAATCGGGTATGTCCCACAGAGAGCCGTACTTTTCAG
CGGTACAGTGGCATCCAATGTTTCGTATGGCGATAACGGAAGAGCAGAAGCTTCGGAGAAACTCGTCAAAACAGCCGTGG
GGATTGCCCAAGGCACGGAATTTGTTGAAAAAATGGACGGTCAGTATCAAGGACGGATTTCACAAGGTGGAGCGAACGTG
TCCGGTGGTCAAAAGCAGCGTCTGTCCATTGCGCGTGCCATCTACCGTCAGCCGGAGATTTATATCTTCGATGATTCCTT
CTCGGCATTGGACTACAGAACAGACCGGATTCTGCGCTCGGCGCTTAAACAAGAAACCGGCCATGCTACGACACTCATTG
TTGCTCAGCGCATAGGCACCATTAAGGACGCTGACCGGATTATCGTTCTGGACCAGGGCGAGATTGTAGGGAACGGCACA
CACAAAGAGCTGATGGCGAATTGCAGCACCTATCAGGAGATCGCTTATTCGCAGCTTTCGAAGGAGGAACTCGTACATGG
ACAAGAATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(356-506)

ABC transporter transmembrane region (ABC_membrane)

(17-292)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

52.167

100

0.531