Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   M9Y03_RS07720 Genome accession   NZ_CP097639
Coordinates   1647278..1648108 (-) Length   276 a.a.
NCBI ID   WP_003709392.1    Uniprot ID   -
Organism   Ligilactobacillus salivarius strain S01     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1642278..1653108
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M9Y03_RS07700 (M9Y03_07700) dhaQ 1643410..1644366 (+) 957 WP_250200677.1 DhaKLM operon coactivator DhaQ -
  M9Y03_RS07705 (M9Y03_07705) dhaS 1644367..1644891 (-) 525 WP_069468888.1 dihydroxyacetone kinase transcriptional activator DhaS -
  M9Y03_RS07710 (M9Y03_07710) brnQ 1645037..1646419 (-) 1383 WP_250200678.1 branched-chain amino acid transport system II carrier protein -
  M9Y03_RS07715 (M9Y03_07715) - 1646958..1647224 (+) 267 WP_003701014.1 hypothetical protein -
  M9Y03_RS07720 (M9Y03_07720) endA 1647278..1648108 (-) 831 WP_003709392.1 DNA/RNA non-specific endonuclease Machinery gene
  M9Y03_RS07725 (M9Y03_07725) - 1648476..1649078 (+) 603 WP_003701011.1 nitroreductase family protein -
  M9Y03_RS07730 (M9Y03_07730) - 1649132..1651063 (-) 1932 WP_250200679.1 heavy metal translocating P-type ATPase -
  M9Y03_RS07735 (M9Y03_07735) - 1651186..1651527 (+) 342 WP_250200680.1 metalloregulator ArsR/SmtB family transcription factor -

Sequence

Protein


Download         Length: 276 a.a.        Molecular weight: 30410.73 Da        Isoelectric Point: 10.4970

>NTDB_id=691408 M9Y03_RS07720 WP_003709392.1 1647278..1648108(-) (endA) [Ligilactobacillus salivarius strain S01]
MARKKKNKSNKFMRWLATVAVGVALAAVGVNTNHISTPFNNEVASSSTYNKKDYTPTEEQASVVLTDNVRQQLGGNLSFN
GAGAFIVNNNKTNLNTKVSSAPYAVNEVDSLNRPTVANAWLNRTSRQYKNRQATGNGRTSWKPQGFRQVQNLPGRFKHAY
DRGHLLAYALVGNVRGFDASESNEKNIATQTAWANESASKDSTGQNYYEGLVRKALDRNKQVRYRVTDVYDGNNLVPAGA
HLEAKSSDGSLEFNVFVPNVQTNININYATGQATRK

Nucleotide


Download         Length: 831 bp        

>NTDB_id=691408 M9Y03_RS07720 WP_003709392.1 1647278..1648108(-) (endA) [Ligilactobacillus salivarius strain S01]
ATGGCAAGAAAAAAGAAAAATAAATCAAATAAATTTATGAGATGGTTAGCTACCGTTGCTGTAGGGGTTGCTTTAGCAGC
AGTAGGGGTTAATACAAATCATATTAGTACACCATTTAATAATGAGGTTGCAAGTAGTAGTACATATAACAAAAAGGATT
ACACTCCTACTGAGGAACAAGCAAGTGTAGTATTAACAGATAATGTACGCCAACAATTAGGTGGTAATTTAAGCTTTAAT
GGGGCAGGAGCTTTTATTGTAAATAATAATAAGACTAACTTAAATACAAAAGTTTCTAGTGCACCATATGCTGTTAATGA
GGTTGATTCATTGAATCGACCAACCGTTGCGAATGCTTGGCTAAATAGAACTAGTCGTCAATATAAAAATCGTCAAGCTA
CAGGAAATGGACGTACAAGTTGGAAGCCACAAGGATTTAGACAGGTACAAAACCTGCCAGGTAGATTCAAGCATGCTTAT
GATAGAGGACATTTATTAGCATATGCGCTTGTGGGAAATGTTAGAGGGTTTGATGCTTCTGAATCTAATGAAAAGAATAT
AGCCACTCAAACTGCATGGGCTAATGAATCAGCTTCTAAGGATTCTACCGGACAAAATTACTACGAAGGATTGGTAAGAA
AAGCTTTAGATAGAAACAAGCAGGTTCGTTATCGTGTGACAGATGTCTATGATGGTAATAATCTAGTGCCAGCAGGAGCA
CATTTGGAAGCTAAATCATCAGATGGTTCGCTAGAATTTAATGTATTTGTGCCTAATGTACAAACTAACATAAATATTAA
TTATGCTACAGGACAAGCTACTAGGAAATAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(83-250)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

60.538

80.797

0.489
  endA Streptococcus pneumoniae D39

60.538

80.797

0.489
  endA Streptococcus pneumoniae R6

60.538

80.797

0.489
  endA Streptococcus pneumoniae TIGR4

60.538

80.797

0.489