Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   M8965_RS17230 Genome accession   NZ_CP097602
Coordinates   3388042..3388821 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain UA0244     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3383042..3393821
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M8965_RS17210 trmFO 3383729..3385036 (+) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  M8965_RS17215 xerC 3385106..3386023 (+) 918 WP_007409774.1 tyrosine recombinase XerC -
  M8965_RS17220 hslV 3386039..3386584 (+) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  M8965_RS17225 hslU 3386601..3388004 (+) 1404 WP_007611413.1 HslU--HslV peptidase ATPase subunit -
  M8965_RS17230 codY 3388042..3388821 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  M8965_RS17235 flgB 3389175..3389564 (+) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  M8965_RS17240 flgC 3389564..3390016 (+) 453 WP_007409776.1 flagellar basal body rod protein FlgC -
  M8965_RS17245 fliE 3390027..3390347 (+) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  M8965_RS17250 fliF 3390390..3392000 (+) 1611 WP_032874889.1 flagellar basal-body MS-ring/collar protein FliF -
  M8965_RS17255 fliG 3392013..3393029 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  M8965_RS17260 fliH 3393022..3393777 (+) 756 WP_032874891.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=691045 M8965_RS17230 WP_003154263.1 3388042..3388821(+) (codY) [Bacillus velezensis strain UA0244]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=691045 M8965_RS17230 WP_003154263.1 3388042..3388821(+) (codY) [Bacillus velezensis strain UA0244]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTAGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471