Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   M8968_RS13430 Genome accession   NZ_CP097594
Coordinates   2738611..2739390 (-) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain UA0182     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2733611..2744390
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M8968_RS13400 fliH 2733655..2734410 (-) 756 WP_032874891.1 flagellar assembly protein FliH -
  M8968_RS13405 fliG 2734403..2735419 (-) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  M8968_RS13410 fliF 2735432..2737042 (-) 1611 WP_032874889.1 flagellar basal-body MS-ring/collar protein FliF -
  M8968_RS13415 fliE 2737085..2737405 (-) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  M8968_RS13420 flgC 2737416..2737868 (-) 453 WP_007409776.1 flagellar basal body rod protein FlgC -
  M8968_RS13425 flgB 2737868..2738257 (-) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  M8968_RS13430 codY 2738611..2739390 (-) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  M8968_RS13435 hslU 2739428..2740840 (-) 1413 WP_254894347.1 HslU--HslV peptidase ATPase subunit -
  M8968_RS13440 hslV 2740848..2741393 (-) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  M8968_RS13445 xerC 2741409..2742326 (-) 918 WP_007409774.1 tyrosine recombinase XerC -
  M8968_RS13450 trmFO 2742396..2743703 (-) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=690952 M8968_RS13430 WP_003154263.1 2738611..2739390(-) (codY) [Bacillus velezensis strain UA0182]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=690952 M8968_RS13430 WP_003154263.1 2738611..2739390(-) (codY) [Bacillus velezensis strain UA0182]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTAGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471