Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   M8969_RS08925 Genome accession   NZ_CP097593
Coordinates   1863854..1864633 (-) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain UA0229     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1858854..1869633
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M8969_RS08895 fliH 1858898..1859653 (-) 756 WP_032874891.1 flagellar assembly protein FliH -
  M8969_RS08900 fliG 1859646..1860662 (-) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  M8969_RS08905 fliF 1860675..1862285 (-) 1611 WP_032874889.1 flagellar basal-body MS-ring/collar protein FliF -
  M8969_RS08910 fliE 1862328..1862648 (-) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  M8969_RS08915 flgC 1862659..1863111 (-) 453 WP_007409776.1 flagellar basal body rod protein FlgC -
  M8969_RS08920 flgB 1863111..1863500 (-) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  M8969_RS08925 codY 1863854..1864633 (-) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  M8969_RS08930 hslU 1864671..1866083 (-) 1413 WP_254894347.1 HslU--HslV peptidase ATPase subunit -
  M8969_RS08935 hslV 1866091..1866636 (-) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  M8969_RS08940 xerC 1866652..1867569 (-) 918 WP_007409774.1 tyrosine recombinase XerC -
  M8969_RS08945 trmFO 1867639..1868946 (-) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=690851 M8969_RS08925 WP_003154263.1 1863854..1864633(-) (codY) [Bacillus velezensis strain UA0229]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=690851 M8969_RS08925 WP_003154263.1 1863854..1864633(-) (codY) [Bacillus velezensis strain UA0229]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTAGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471