Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   M8962_RS02785 Genome accession   NZ_CP097591
Coordinates   606910..607689 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain UA0188     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 601910..612689
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M8962_RS02765 trmFO 602597..603904 (+) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  M8962_RS02770 xerC 603974..604891 (+) 918 WP_007409774.1 tyrosine recombinase XerC -
  M8962_RS02775 hslV 604907..605452 (+) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  M8962_RS02780 hslU 605469..606872 (+) 1404 WP_007409775.1 HslU--HslV peptidase ATPase subunit -
  M8962_RS02785 codY 606910..607689 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  M8962_RS02790 flgB 608043..608432 (+) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  M8962_RS02795 flgC 608432..608884 (+) 453 WP_003154259.1 flagellar basal body rod protein FlgC -
  M8962_RS02800 fliE 608895..609215 (+) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  M8962_RS02805 fliF 609258..610868 (+) 1611 WP_012117551.1 flagellar basal-body MS-ring/collar protein FliF -
  M8962_RS02810 fliG 610881..611897 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  M8962_RS02815 fliH 611890..612645 (+) 756 WP_023356896.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=690756 M8962_RS02785 WP_003154263.1 606910..607689(+) (codY) [Bacillus velezensis strain UA0188]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=690756 M8962_RS02785 WP_003154263.1 606910..607689(+) (codY) [Bacillus velezensis strain UA0188]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTAGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCCGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAATGCGCTGAGAAAGCTGGAAAGCGCAGGTGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATCGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471