Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   M8970_RS03780 Genome accession   NZ_CP097590
Coordinates   753568..754347 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain UA0195     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 748568..759347
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M8970_RS03760 trmFO 749255..750562 (+) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  M8970_RS03765 xerC 750632..751549 (+) 918 WP_007409774.1 tyrosine recombinase XerC -
  M8970_RS03770 hslV 751565..752110 (+) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  M8970_RS03775 hslU 752118..753530 (+) 1413 WP_254894347.1 HslU--HslV peptidase ATPase subunit -
  M8970_RS03780 codY 753568..754347 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  M8970_RS03785 flgB 754701..755090 (+) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  M8970_RS03790 flgC 755090..755542 (+) 453 WP_007409776.1 flagellar basal body rod protein FlgC -
  M8970_RS03795 fliE 755553..755873 (+) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  M8970_RS03800 fliF 755916..757526 (+) 1611 WP_032874889.1 flagellar basal-body MS-ring/collar protein FliF -
  M8970_RS03805 fliG 757539..758555 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  M8970_RS03810 fliH 758548..759303 (+) 756 WP_032874891.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=690693 M8970_RS03780 WP_003154263.1 753568..754347(+) (codY) [Bacillus velezensis strain UA0195]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=690693 M8970_RS03780 WP_003154263.1 753568..754347(+) (codY) [Bacillus velezensis strain UA0195]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTAGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471