Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   M8966_RS04870 Genome accession   NZ_CP097589
Coordinates   1045454..1046233 (-) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain UA0311     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1040454..1051233
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M8966_RS04840 fliH 1040498..1041253 (-) 756 WP_023356896.1 flagellar assembly protein FliH -
  M8966_RS04845 fliG 1041246..1042262 (-) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  M8966_RS04850 fliF 1042275..1043885 (-) 1611 WP_012117551.1 flagellar basal-body MS-ring/collar protein FliF -
  M8966_RS04855 fliE 1043928..1044248 (-) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  M8966_RS04860 flgC 1044259..1044711 (-) 453 WP_003154259.1 flagellar basal body rod protein FlgC -
  M8966_RS04865 flgB 1044711..1045100 (-) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  M8966_RS04870 codY 1045454..1046233 (-) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  M8966_RS04875 hslU 1046271..1047683 (-) 1413 WP_256052823.1 HslU--HslV peptidase ATPase subunit -
  M8966_RS04880 hslV 1047691..1048236 (-) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  M8966_RS04885 xerC 1048252..1049169 (-) 918 WP_007409774.1 tyrosine recombinase XerC -
  M8966_RS04890 trmFO 1049239..1050546 (-) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=690615 M8966_RS04870 WP_003154263.1 1045454..1046233(-) (codY) [Bacillus velezensis strain UA0311]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=690615 M8966_RS04870 WP_003154263.1 1045454..1046233(-) (codY) [Bacillus velezensis strain UA0311]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTAGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCCGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAATGCGCTGAGAAAGCTGGAAAGCGCAGGTGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATCGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471