Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   M8961_RS01220 Genome accession   NZ_CP097588
Coordinates   333074..333853 (-) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain UA0323     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 328074..338853
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M8961_RS01190 fliH 328118..328873 (-) 756 WP_023356896.1 flagellar assembly protein FliH -
  M8961_RS01195 fliG 328866..329882 (-) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  M8961_RS01200 fliF 329895..331505 (-) 1611 WP_012117551.1 flagellar basal-body MS-ring/collar protein FliF -
  M8961_RS01205 fliE 331548..331868 (-) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  M8961_RS01210 flgC 331879..332331 (-) 453 WP_003154259.1 flagellar basal body rod protein FlgC -
  M8961_RS01215 flgB 332331..332720 (-) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  M8961_RS01220 codY 333074..333853 (-) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  M8961_RS01225 hslU 333891..335294 (-) 1404 WP_007409775.1 HslU--HslV peptidase ATPase subunit -
  M8961_RS01230 hslV 335311..335856 (-) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  M8961_RS01235 xerC 335872..336789 (-) 918 WP_007409774.1 tyrosine recombinase XerC -
  M8961_RS01240 trmFO 336859..338166 (-) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=690526 M8961_RS01220 WP_003154263.1 333074..333853(-) (codY) [Bacillus velezensis strain UA0323]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=690526 M8961_RS01220 WP_003154263.1 333074..333853(-) (codY) [Bacillus velezensis strain UA0323]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTAGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCCGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAATGCGCTGAGAAAGCTGGAAAGCGCAGGTGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATCGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471