Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   M8957_RS05530 Genome accession   NZ_CP097587
Coordinates   1197537..1198316 (-) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain UA0276     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1192537..1203316
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M8957_RS05500 fliH 1192581..1193336 (-) 756 WP_023356896.1 flagellar assembly protein FliH -
  M8957_RS05505 fliG 1193329..1194345 (-) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  M8957_RS05510 fliF 1194358..1195968 (-) 1611 WP_012117551.1 flagellar basal-body MS-ring/collar protein FliF -
  M8957_RS05515 fliE 1196011..1196331 (-) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  M8957_RS05520 flgC 1196342..1196794 (-) 453 WP_003154259.1 flagellar basal body rod protein FlgC -
  M8957_RS05525 flgB 1196794..1197183 (-) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  M8957_RS05530 codY 1197537..1198316 (-) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  M8957_RS05535 hslU 1198354..1199757 (-) 1404 WP_007409775.1 HslU--HslV peptidase ATPase subunit -
  M8957_RS05540 hslV 1199774..1200319 (-) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  M8957_RS05545 xerC 1200335..1201252 (-) 918 WP_007409774.1 tyrosine recombinase XerC -
  M8957_RS05550 trmFO 1201322..1202629 (-) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=690471 M8957_RS05530 WP_003154263.1 1197537..1198316(-) (codY) [Bacillus velezensis strain UA0276]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=690471 M8957_RS05530 WP_003154263.1 1197537..1198316(-) (codY) [Bacillus velezensis strain UA0276]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTAGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCCGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAATGCGCTGAGAAAGCTGGAAAGCGCAGGTGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATCGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471