Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   M8964_RS12575 Genome accession   NZ_CP097585
Coordinates   2499230..2500009 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain UA1365     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2494230..2505009
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M8964_RS12555 trmFO 2494917..2496224 (+) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  M8964_RS12560 xerC 2496294..2497211 (+) 918 WP_007409774.1 tyrosine recombinase XerC -
  M8964_RS12565 hslV 2497227..2497772 (+) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  M8964_RS12570 hslU 2497780..2499192 (+) 1413 WP_256052823.1 HslU--HslV peptidase ATPase subunit -
  M8964_RS12575 codY 2499230..2500009 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  M8964_RS12580 flgB 2500363..2500752 (+) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  M8964_RS12585 flgC 2500752..2501204 (+) 453 WP_003154259.1 flagellar basal body rod protein FlgC -
  M8964_RS12590 fliE 2501215..2501535 (+) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  M8964_RS12595 fliF 2501578..2503188 (+) 1611 WP_012117551.1 flagellar basal-body MS-ring/collar protein FliF -
  M8964_RS12600 fliG 2503201..2504217 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  M8964_RS12605 fliH 2504210..2504965 (+) 756 WP_023356896.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=690422 M8964_RS12575 WP_003154263.1 2499230..2500009(+) (codY) [Bacillus velezensis strain UA1365]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=690422 M8964_RS12575 WP_003154263.1 2499230..2500009(+) (codY) [Bacillus velezensis strain UA1365]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTAGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCCGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAATGCGCTGAGAAAGCTGGAAAGCGCAGGTGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATCGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471