Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   ORP33_RS08060 Genome accession   NZ_CP113256
Coordinates   1536429..1536878 (+) Length   149 a.a.
NCBI ID   WP_225721983.1    Uniprot ID   -
Organism   Bacillus subtilis strain K1     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1531429..1541878
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ORP33_RS08020 (ORP33_07900) ctaE 1531446..1532069 (+) 624 WP_003232244.1 cytochrome c oxidase subunit III -
  ORP33_RS08025 (ORP33_07905) ctaF 1532072..1532404 (+) 333 WP_003232242.1 cytochrome c oxidase subunit IVB -
  ORP33_RS08030 (ORP33_07910) ctaG 1532431..1533324 (+) 894 WP_015252153.1 cytochrome c oxidase assembly factor CtaG -
  ORP33_RS08035 (ORP33_07915) ylbA 1533356..1533718 (-) 363 WP_003232238.1 YugN family protein -
  ORP33_RS08040 (ORP33_07920) ylbB 1533858..1534304 (+) 447 WP_003221362.1 CBS domain-containing protein -
  ORP33_RS08045 (ORP33_07925) ylbC 1534388..1535428 (+) 1041 WP_014479713.1 CAP domain-containing protein -
  ORP33_RS08050 (ORP33_07930) ylbD 1535660..1536058 (+) 399 WP_003232233.1 YlbD family protein -
  ORP33_RS08055 (ORP33_07935) ylbE 1536074..1536313 (+) 240 WP_003232231.1 YlbE-like family protein -
  ORP33_RS08060 (ORP33_07940) ylbF 1536429..1536878 (+) 450 WP_225721983.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  ORP33_RS08065 (ORP33_07945) ylbG 1536933..1537205 (+) 273 WP_015715839.1 YlbG family protein -
  ORP33_RS08070 (ORP33_07950) rsmD 1537528..1538082 (+) 555 WP_225721984.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  ORP33_RS08075 (ORP33_07955) coaD 1538087..1538572 (+) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  ORP33_RS08080 (ORP33_07960) spoVV 1538583..1539809 (-) 1227 WP_015252149.1 dipicolinic acid transporter SpoVV -
  ORP33_RS08085 (ORP33_07965) ylbK 1539990..1540772 (+) 783 WP_003232221.1 patatin family protein -
  ORP33_RS08090 (ORP33_07970) sepM 1540774..1541799 (+) 1026 WP_029317763.1 protease DdcP Regulator

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16943.99 Da        Isoelectric Point: 4.9284

>NTDB_id=690389 ORP33_RS08060 WP_225721983.1 1536429..1536878(+) (ylbF) [Bacillus subtilis strain K1]
MYATMESVRLQSEAQQLAEMILQSETAENYRNCYKRLQEDEEAGRIIRSFIKIKEQYEDVQRFGKYHPDYREISRKMREI
KRELDLNDKVADFKRAENELQSILDEVSVEIGTAVSEHVKVPTGNPYFDGLSSCGGGCSSGGSCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=690389 ORP33_RS08060 WP_225721983.1 1536429..1536878(+) (ylbF) [Bacillus subtilis strain K1]
ATGTATGCGACGATGGAATCCGTGCGGCTTCAAAGTGAAGCTCAGCAGCTTGCCGAGATGATTCTGCAGTCGGAGACGGC
TGAGAACTACCGCAATTGTTACAAGCGTCTCCAGGAAGATGAAGAGGCAGGTCGGATTATTCGTTCTTTTATCAAAATAA
AAGAGCAGTATGAGGATGTACAGCGTTTTGGCAAATATCATCCTGACTATAGAGAAATATCCCGGAAAATGAGGGAGATC
AAACGTGAGCTGGACCTGAACGATAAGGTGGCTGACTTCAAGAGAGCTGAAAATGAGCTCCAGTCCATTCTTGATGAGGT
CAGCGTTGAGATTGGGACAGCTGTTTCGGAGCATGTGAAAGTTCCGACTGGGAACCCTTATTTTGACGGTTTGTCTTCAT
GCGGAGGCGGCTGCAGTTCAGGCGGAAGCTGCGGATGTAAAGTGTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

99.329

100

0.993