Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   M8286_RS03810 Genome accession   NZ_CP097577
Coordinates   778410..779249 (+) Length   279 a.a.
NCBI ID   WP_275601528.1    Uniprot ID   -
Organism   Streptococcus suis strain 3112     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 773410..784249
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M8286_RS03780 (M8286_03800) - 773875..774753 (+) 879 WP_002936012.1 F0F1 ATP synthase subunit gamma -
  M8286_RS03785 (M8286_03805) atpD 774773..776179 (+) 1407 WP_024407431.1 F0F1 ATP synthase subunit beta -
  M8286_RS03790 (M8286_03810) - 776189..776605 (+) 417 WP_002936007.1 F0F1 ATP synthase subunit epsilon -
  M8286_RS03795 (M8286_03815) - 776665..776889 (+) 225 WP_012775178.1 DUF1146 family protein -
  M8286_RS03800 (M8286_03820) murA 776913..778196 (+) 1284 WP_044673805.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  M8286_RS03805 (M8286_03825) - 778189..778380 (+) 192 WP_012775177.1 DNA-directed RNA polymerase subunit beta -
  M8286_RS03810 (M8286_03830) endA 778410..779249 (+) 840 WP_275601528.1 DNA/RNA non-specific endonuclease Machinery gene
  M8286_RS03815 (M8286_03835) - 779437..780990 (+) 1554 WP_275601529.1 MFS transporter -
  M8286_RS03820 (M8286_03840) - 781046..782074 (+) 1029 WP_275601530.1 sugar kinase -
  M8286_RS03825 (M8286_03845) uidA 782089..783888 (+) 1800 WP_275601531.1 beta-glucuronidase -

Sequence

Protein


Download         Length: 279 a.a.        Molecular weight: 30118.26 Da        Isoelectric Point: 6.2355

>NTDB_id=690335 M8286_RS03810 WP_275601528.1 778410..779249(+) (endA) [Streptococcus suis strain 3112]
MAKKNVKKQAMSLLSLLATIVVVAGGYLLSDNKSSNVADYSYYVNQSKASEGTPSQDLASSVLTEDVKKQLGNSIEWNGA
GAFIINGNQTDLDASVASVPYGDNKTKTVQGETVPTVANALLAKSTRQYKDREETGNGRTSWTPAGWHQVHDLTGEYDHA
VDRGHLLGYALIGGLSGFDASTSNPKNIAVQTAWSNQANDQTSTGQNYFESQIRRALDKNKRVRYRVTLVYAENDDLVPV
GSHLEAKAADGSLEFNVFVPNVQSGLSINYHSGEIAVNQ

Nucleotide


Download         Length: 840 bp        

>NTDB_id=690335 M8286_RS03810 WP_275601528.1 778410..779249(+) (endA) [Streptococcus suis strain 3112]
ATGGCGAAGAAAAATGTAAAAAAACAAGCAATGAGTCTGCTCAGCTTATTGGCTACGATTGTTGTAGTAGCGGGTGGCTA
TCTTTTAAGTGATAACAAGAGCAGTAACGTTGCTGATTATTCCTATTATGTCAATCAGTCTAAGGCAAGTGAAGGCACAC
CTAGTCAGGATCTGGCTAGTTCGGTATTGACAGAAGATGTAAAAAAGCAACTGGGGAATTCGATTGAATGGAATGGTGCT
GGAGCATTTATTATTAACGGGAATCAAACGGATTTAGATGCATCGGTTGCCAGTGTTCCTTATGGTGATAATAAGACAAA
AACAGTCCAGGGAGAAACTGTTCCAACAGTAGCCAATGCGCTTTTAGCCAAATCTACACGTCAGTATAAGGACCGTGAAG
AAACAGGAAATGGTCGGACTTCTTGGACACCTGCGGGTTGGCATCAGGTCCATGATTTAACTGGAGAATATGACCATGCA
GTGGACCGTGGTCACCTCCTAGGTTATGCTTTGATTGGTGGATTGTCTGGTTTCGATGCTTCAACCAGCAATCCTAAGAA
TATTGCAGTTCAAACAGCTTGGTCCAACCAAGCTAACGACCAAACTTCAACTGGGCAGAATTATTTTGAAAGTCAGATTC
GGCGGGCCTTGGATAAAAATAAGCGTGTCCGCTATCGTGTGACCTTGGTGTATGCTGAGAATGATGACCTTGTTCCAGTC
GGAAGCCATCTAGAGGCAAAAGCAGCAGATGGTAGCCTAGAGTTCAATGTGTTCGTTCCAAATGTGCAGAGCGGTCTCAG
TATCAACTATCATAGTGGGGAAATTGCAGTAAATCAATAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(81-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

70.763

84.588

0.599
  endA Streptococcus pneumoniae D39

70.763

84.588

0.599
  endA Streptococcus pneumoniae R6

70.763

84.588

0.599
  endA Streptococcus pneumoniae TIGR4

70.763

84.588

0.599