Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   OUY06_RS04745 Genome accession   NZ_CP113247
Coordinates   928733..931261 (+) Length   842 a.a.
NCBI ID   WP_056936400.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain CNSC001WB     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 923733..936261
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OUY06_RS04725 - 924375..925673 (+) 1299 WP_016264986.1 pyrimidine-nucleoside phosphorylase -
  OUY06_RS04730 - 925910..927244 (+) 1335 WP_025015827.1 FAD-dependent oxidoreductase -
  OUY06_RS04735 - 927397..928056 (+) 660 WP_016264988.1 histidine phosphatase family protein -
  OUY06_RS04740 - 928068..928727 (+) 660 WP_016264989.1 tetratricopeptide repeat protein -
  OUY06_RS04745 recD/recD2/recDB 928733..931261 (+) 2529 WP_056936400.1 ATP-dependent RecD-like DNA helicase Machinery gene
  OUY06_RS04750 - 931304..932515 (+) 1212 WP_011374512.1 GNAT family N-acetyltransferase -
  OUY06_RS04755 - 932576..932815 (-) 240 WP_011374513.1 hypothetical protein -
  OUY06_RS04760 - 933080..933691 (+) 612 WP_016264992.1 LysE family transporter -
  OUY06_RS04765 - 933783..934895 (+) 1113 WP_016264993.1 DNA alkylation repair protein -
  OUY06_RS04770 - 935074..935790 (+) 717 WP_016264994.1 MerR family transcriptional regulator -

Sequence

Protein


Download         Length: 842 a.a.        Molecular weight: 93311.49 Da        Isoelectric Point: 5.0804

>NTDB_id=690283 OUY06_RS04745 WP_056936400.1 928733..931261(+) (recD/recD2/recDB) [Latilactobacillus sakei strain CNSC001WB]
MAILETENTVDNKPTVTGTVQSVFYENPGNFFKILLIKIAHKTIDWHEPEIVVTGSFGEIKEDERYTFYGKVITHPKYGQ
QFQADNYQVDQPTTKTGLVAYLSGEKFAGIGQKTAEKIVDTLGLDAIDKILADSTVLAPLGLNDKKQATLVETLTINNGM
EQIIIGLNNYGFGSSMAYNIYQTYHEDTLKIIQENPYQLVADIAGIGFKRADNLAEKIGFAADSPARIQGALMQALNELT
NQAGDTFTQAKPLLAASIQLMEQARNVAIDPNLVAEQLMVLAHDGKVVGDENRIYPNGLYNAEWQIANHLMRIENERDKI
SYPKHDLDKEIRRLEKRFKMSYDGVQKNAIKLAMTHRAFLLTGGPGTGKTTIINGIVTLFAELNGLSLDINEYKDTPFPI
LLAAPTGRAAKRMSETTGLPASTIHRLLGITGRENNPDIDSKELEGGLLIVDEMSMVDTYLFRSLIRAVPSNMQVVFVGD
KDQLPSVGAGQVFFDLLQSQAIPAIELQQIYRQDDESTIIPLAHEINQGQLPADLLQPQKDRSFIQCSPYQIESVIKQVV
TKAKERGFETKDIQVLAPMYRGAAGIDQLNPMIQNIMNPKVDDRKKQVSLGNVHYRIGDKILHLVNSPELNVFNGEIGQI
TGITYAKDSDDKMDELTIAFDSTEITYKRTEWHKITLAYCTSIHKAQGSEFEMVILPLVNQYQRMLKRNLLYTAVTRARS
LLILIGEPSAFDKAAKELSANRQTTLKERIISVFNGEKVSQAVKTASVGLTEAKPAVEKPTPAKEAAPEQLALVDDADDS
EETIQEAPANYELTPALVSGHQIDPMIGMADLTPYTFMTSAK

Nucleotide


Download         Length: 2529 bp        

>NTDB_id=690283 OUY06_RS04745 WP_056936400.1 928733..931261(+) (recD/recD2/recDB) [Latilactobacillus sakei strain CNSC001WB]
ATGGCGATTTTGGAAACAGAAAATACGGTCGATAATAAACCAACCGTTACCGGAACGGTCCAAAGTGTTTTTTACGAGAA
TCCCGGTAACTTTTTTAAGATTCTCTTGATTAAAATTGCCCATAAGACAATTGATTGGCACGAGCCAGAGATTGTCGTGA
CTGGTAGTTTTGGTGAGATTAAAGAAGACGAACGCTATACGTTTTATGGCAAAGTCATCACCCATCCTAAATACGGTCAA
CAATTTCAAGCTGACAACTATCAGGTTGACCAACCGACGACTAAGACTGGCTTAGTCGCCTATTTATCTGGCGAAAAATT
TGCCGGCATCGGTCAAAAAACGGCAGAGAAGATTGTCGATACCTTAGGATTAGACGCGATTGATAAGATCTTAGCGGATT
CAACCGTTTTAGCGCCGCTGGGTTTAAATGATAAGAAACAAGCGACGTTGGTTGAAACGTTGACGATTAATAATGGGATG
GAACAAATTATCATTGGCCTCAATAATTACGGTTTTGGGAGCTCGATGGCCTATAATATCTATCAGACTTATCACGAAGA
TACCTTGAAGATTATTCAAGAAAATCCTTATCAACTAGTGGCCGACATTGCCGGTATTGGGTTTAAACGGGCGGATAATT
TAGCCGAGAAAATTGGCTTTGCAGCCGATTCGCCAGCACGGATTCAAGGGGCGCTGATGCAAGCCTTGAACGAACTGACA
AATCAAGCGGGTGATACGTTCACTCAGGCGAAGCCGTTATTAGCAGCCAGCATTCAATTGATGGAACAGGCACGGAACGT
GGCGATTGATCCGAATTTAGTGGCAGAGCAATTAATGGTCTTGGCACACGACGGCAAAGTGGTCGGAGATGAAAATCGGA
TTTATCCGAATGGTTTGTACAACGCGGAATGGCAAATTGCGAACCACTTGATGCGGATTGAAAATGAACGGGATAAAATT
AGTTATCCTAAACATGATCTGGATAAAGAAATTCGCCGGCTCGAAAAACGTTTTAAGATGAGCTATGATGGTGTTCAAAA
AAATGCAATCAAATTGGCGATGACGCACAGAGCCTTTCTACTAACGGGGGGCCCTGGTACGGGGAAAACAACGATTATTA
ATGGGATTGTGACTTTATTTGCTGAGTTAAACGGTCTTTCGCTTGATATCAACGAATATAAAGACACACCATTCCCAATT
TTATTGGCGGCACCCACCGGGCGAGCCGCTAAACGGATGAGTGAAACAACTGGCTTGCCAGCTAGCACGATTCATCGTTT
GTTAGGGATTACGGGCCGTGAAAATAATCCTGATATCGATAGTAAGGAACTAGAAGGCGGCTTATTAATTGTCGATGAAA
TGTCGATGGTTGATACGTACCTCTTTAGATCGCTGATTCGAGCGGTGCCTAGCAATATGCAAGTCGTCTTTGTTGGTGAT
AAAGATCAGTTGCCATCAGTTGGCGCGGGGCAAGTCTTTTTTGATTTACTGCAGAGTCAGGCAATTCCGGCAATCGAACT
GCAACAAATCTACCGACAAGACGATGAGTCGACGATTATTCCGCTAGCCCATGAGATTAATCAGGGCCAACTACCAGCTG
ATTTACTCCAACCGCAAAAGGATCGGAGCTTTATTCAGTGCAGTCCTTATCAGATTGAATCAGTGATTAAACAAGTGGTC
ACTAAAGCAAAAGAACGGGGTTTTGAGACGAAGGACATTCAAGTGCTAGCACCGATGTATCGTGGGGCAGCCGGAATTGA
TCAATTAAATCCAATGATTCAAAATATCATGAATCCGAAGGTCGATGATCGTAAGAAACAAGTTAGTTTAGGCAATGTTC
ATTACCGGATTGGCGATAAGATTTTACATCTGGTTAATAGTCCGGAATTAAACGTCTTTAACGGTGAAATTGGGCAAATA
ACCGGGATTACGTATGCTAAAGATAGTGATGACAAGATGGACGAGTTAACGATTGCCTTTGATAGTACCGAAATTACCTA
TAAACGGACGGAATGGCATAAAATTACGTTGGCGTATTGTACGTCGATTCATAAGGCTCAAGGTTCTGAATTTGAAATGG
TAATTCTACCATTGGTTAACCAATACCAGCGGATGCTGAAACGGAACTTGTTGTATACAGCAGTGACACGGGCGCGGTCC
TTATTGATTTTAATTGGGGAACCAAGTGCTTTTGATAAAGCAGCTAAGGAATTATCCGCAAACCGACAAACAACGCTTAA
AGAACGGATTATCAGCGTCTTTAATGGTGAAAAGGTGAGCCAAGCGGTCAAAACTGCAAGTGTTGGTTTAACGGAAGCTA
AACCGGCTGTTGAAAAGCCAACGCCGGCTAAAGAAGCGGCGCCAGAACAATTGGCATTAGTGGACGATGCAGATGACAGC
GAAGAAACAATTCAAGAAGCACCTGCTAATTATGAATTAACACCAGCCTTGGTGAGTGGTCATCAGATTGACCCGATGAT
TGGAATGGCGGATTTAACGCCGTACACATTCATGACAAGTGCTAAGTAG

Domains

Predicted by InterProScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(589-660)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(678-725)

Helix-hairpin-helix containing domain (HHH_RecD2)

(157-247)

AAA domain (AAA_30)

(343-547)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

46.933

89.074

0.418