Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   M8X21_RS08715 Genome accession   NZ_CP097467
Coordinates   1699304..1700083 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain HMB26553     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1694304..1705083
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M8X21_RS08695 (M8X21_08695) trmFO 1694991..1696298 (+) 1308 WP_029973471.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  M8X21_RS08700 (M8X21_08700) xerC 1696368..1697285 (+) 918 WP_007409774.1 tyrosine recombinase XerC -
  M8X21_RS08705 (M8X21_08705) hslV 1697301..1697846 (+) 546 WP_014417767.1 ATP-dependent protease subunit HslV -
  M8X21_RS08710 (M8X21_08710) hslU 1697854..1699266 (+) 1413 WP_254894347.1 HslU--HslV peptidase ATPase subunit -
  M8X21_RS08715 (M8X21_08715) codY 1699304..1700083 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  M8X21_RS08720 (M8X21_08720) flgB 1700437..1700826 (+) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  M8X21_RS08725 (M8X21_08725) flgC 1700826..1701278 (+) 453 WP_015239851.1 flagellar basal body rod protein FlgC -
  M8X21_RS08730 (M8X21_08730) fliE 1701289..1701609 (+) 321 WP_029973469.1 flagellar hook-basal body complex protein FliE -
  M8X21_RS08735 (M8X21_08735) fliF 1701652..1703262 (+) 1611 WP_029973468.1 flagellar basal-body MS-ring/collar protein FliF -
  M8X21_RS08740 (M8X21_08740) fliG 1703275..1704291 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  M8X21_RS08745 (M8X21_08745) fliH 1704284..1705039 (+) 756 WP_029973467.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=689625 M8X21_RS08715 WP_003154263.1 1699304..1700083(+) (codY) [Bacillus velezensis strain HMB26553]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=689625 M8X21_RS08715 WP_003154263.1 1699304..1700083(+) (codY) [Bacillus velezensis strain HMB26553]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCAGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTAGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCAGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTTAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471