Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   M5595_RS20250 Genome accession   NZ_CP097376
Coordinates   4303450..4305213 (+) Length   587 a.a.
NCBI ID   WP_038350658.1    Uniprot ID   -
Organism   Eubacterium limosum strain B2     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 4298450..4310213
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M5595_RS20225 (M5595_20225) - 4299117..4299827 (-) 711 WP_013381353.1 tRNA 2-thiocytidine(32) synthetase TtcA -
  M5595_RS20230 (M5595_20230) - 4300051..4300542 (+) 492 WP_013381352.1 small multi-drug export protein -
  M5595_RS20235 (M5595_20235) - 4300547..4301344 (+) 798 WP_038350661.1 Cof-type HAD-IIB family hydrolase -
  M5595_RS20240 (M5595_20240) - 4301538..4302578 (-) 1041 WP_038350660.1 HAMP domain-containing sensor histidine kinase -
  M5595_RS20245 (M5595_20245) - 4302575..4303249 (-) 675 WP_038350659.1 response regulator transcription factor -
  M5595_RS20250 (M5595_20250) rcrP 4303450..4305213 (+) 1764 WP_038350658.1 ABC transporter ATP-binding protein Regulator
  M5595_RS20255 (M5595_20255) rcrQ 4305206..4307095 (+) 1890 WP_038350657.1 ABC transporter ATP-binding protein Regulator
  M5595_RS20260 (M5595_20260) - 4307420..4308652 (+) 1233 WP_038350656.1 aminopeptidase P N-terminal domain-containing protein -

Sequence

Protein


Download         Length: 587 a.a.        Molecular weight: 64946.54 Da        Isoelectric Point: 6.0436

>NTDB_id=689306 M5595_RS20250 WP_038350658.1 4303450..4305213(+) (rcrP) [Eubacterium limosum strain B2]
MLKIFKYLRKKDWGLILLSLVFIIIQVWLDLKMPDYMSGITRLVQTEGSAMADILISGGKMLLCTLGSFAAAVVVGFLVA
KIAAGLSMRLREKVYDKTMSFSMEEINGFSTASLIIRSTNDITQIQMCVTMGLQAIIKAPIMAVWAIVKIAGKGWEWTAV
TGGAVLILVLMLGIIIALTMPKFKSIQKYTDNLNRVTRENLTGLRVVRAYHAENYQEARFEKANNDLTQNNLFTSRAMAF
MQPGMQLLMSGLGLAIYWIGVYLIDGAIGPDKLTLFSDMVVFQQYAMQVVMAFMLLTMTLIILPRAAVSAKRVNEVLDSE
EKIADGTTTGPELYEQGEVEFKNVSFRYPDAEDYILHDINFTAHKGETVAFIGSTGSGKSTLINLVLRFYDTTEGDVLVD
GVNVKEYTQEVLHNKLGYVPQKAVMFSGTVASNVTYGENGKAPAETDDIREAIDIAQATEFVEKMNGTYEATIVQGGTNV
SGGQKQRLAIARAICRRPEIYVFDDSFSALDYKTDRSLRRMLREKTSGTTSLIVAQKIGTIMDADKIIVLDEGKVVGQGT
HHELLKTCPVYLEIAQSQLSKEEIENA

Nucleotide


Download         Length: 1764 bp        

>NTDB_id=689306 M5595_RS20250 WP_038350658.1 4303450..4305213(+) (rcrP) [Eubacterium limosum strain B2]
ATGCTGAAAATATTTAAGTATCTCAGAAAAAAGGACTGGGGACTCATACTTCTCAGTTTGGTCTTTATTATAATCCAGGT
GTGGCTGGATTTAAAAATGCCGGATTATATGTCTGGGATCACCCGTCTGGTGCAAACAGAAGGCAGTGCCATGGCTGATA
TTCTGATCTCCGGTGGTAAAATGCTGCTGTGTACGCTTGGAAGTTTTGCTGCGGCAGTAGTAGTAGGTTTTTTGGTGGCA
AAAATTGCGGCAGGCTTATCTATGAGACTACGGGAAAAGGTATATGATAAAACGATGTCCTTTTCTATGGAAGAAATTAA
CGGATTTTCGACGGCCAGTCTTATTATCCGCTCCACCAACGACATCACACAAATACAGATGTGCGTAACTATGGGATTAC
AAGCTATTATCAAAGCGCCCATTATGGCAGTATGGGCGATTGTAAAAATTGCGGGAAAGGGCTGGGAATGGACGGCAGTT
ACCGGAGGAGCCGTTTTAATCCTTGTTTTAATGCTGGGGATCATCATTGCACTGACTATGCCAAAATTCAAGAGCATTCA
GAAATATACTGATAACCTAAACCGTGTGACCAGAGAAAATCTTACAGGTCTACGTGTAGTCCGTGCATATCATGCAGAGA
ACTATCAGGAAGCCCGTTTTGAAAAAGCCAATAACGACTTAACTCAAAACAACCTGTTTACGAGCCGTGCGATGGCTTTT
ATGCAGCCGGGGATGCAACTTCTGATGTCCGGCCTGGGACTTGCCATCTACTGGATTGGTGTTTATTTGATTGACGGAGC
TATTGGCCCAGATAAGTTGACGCTGTTTTCCGATATGGTTGTTTTCCAACAGTATGCGATGCAAGTAGTTATGGCATTTA
TGTTATTGACAATGACACTTATTATTTTGCCTCGTGCTGCTGTTTCTGCAAAGCGTGTCAATGAGGTGCTGGATAGCGAA
GAAAAGATTGCGGATGGAACCACTACTGGCCCTGAGTTATATGAACAGGGGGAAGTTGAATTTAAGAACGTCAGCTTCCG
TTATCCTGACGCAGAGGATTATATTCTTCATGACATTAATTTCACCGCTCATAAAGGCGAAACAGTGGCTTTTATCGGCT
CTACAGGTTCCGGCAAAAGCACATTGATCAATCTTGTACTACGGTTTTATGATACTACCGAAGGCGATGTGCTTGTGGAT
GGCGTCAATGTTAAGGAATATACGCAGGAAGTCCTTCACAACAAGTTGGGCTATGTACCTCAAAAAGCAGTCATGTTCAG
CGGAACTGTAGCTTCTAATGTAACATACGGTGAGAACGGTAAGGCTCCCGCCGAGACGGACGACATCCGGGAAGCTATTG
ACATTGCCCAAGCAACTGAATTTGTGGAAAAAATGAACGGCACTTATGAAGCGACCATTGTGCAGGGTGGCACGAATGTG
TCTGGTGGCCAAAAACAGAGGCTTGCCATTGCAAGGGCAATCTGCCGACGGCCGGAAATCTATGTATTTGACGATTCTTT
TTCAGCTTTGGATTATAAGACAGATCGTAGTTTGAGAAGAATGCTGAGAGAAAAGACAAGCGGCACAACCAGCCTGATTG
TTGCTCAAAAAATCGGAACGATCATGGATGCTGATAAGATTATTGTTTTGGATGAAGGCAAGGTGGTTGGGCAAGGTACT
CATCATGAGCTTTTAAAGACCTGTCCTGTCTACCTGGAAATTGCTCAATCTCAGTTGTCAAAGGAGGAGATCGAAAATGC
CTGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(356-506)

ABC transporter transmembrane region (ABC_membrane)

(17-292)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

53.255

100

0.543