Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   M5E03_RS08130 Genome accession   NZ_CP097374
Coordinates   1588314..1589093 (+) Length   259 a.a.
NCBI ID   WP_007499612.1    Uniprot ID   A0A9X0FX88
Organism   Bacillus safensis strain AHB11     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1583314..1594093
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M5E03_RS08110 (M5E03_08110) trmFO 1584018..1585322 (+) 1305 WP_024424183.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  M5E03_RS08115 (M5E03_08115) xerC 1585385..1586302 (+) 918 WP_034281771.1 tyrosine recombinase XerC -
  M5E03_RS08120 (M5E03_08120) hslV 1586317..1586862 (+) 546 WP_034281773.1 ATP-dependent protease subunit HslV -
  M5E03_RS08125 (M5E03_08125) hslU 1586879..1588279 (+) 1401 WP_252050421.1 HslU--HslV peptidase ATPase subunit -
  M5E03_RS08130 (M5E03_08130) codY 1588314..1589093 (+) 780 WP_007499612.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  M5E03_RS08135 (M5E03_08135) flgB 1589382..1589771 (+) 390 WP_012009952.1 flagellar basal body rod protein FlgB -
  M5E03_RS08140 (M5E03_08140) flgC 1589771..1590223 (+) 453 WP_024424179.1 flagellar basal body rod protein FlgC -
  M5E03_RS08145 (M5E03_08145) fliE 1590235..1590552 (+) 318 WP_276531172.1 flagellar hook-basal body complex protein FliE -
  M5E03_RS08150 (M5E03_08150) fliF 1590602..1592194 (+) 1593 WP_024424177.1 flagellar basal-body MS-ring/collar protein FliF -
  M5E03_RS08155 (M5E03_08155) fliG 1592206..1593222 (+) 1017 WP_034281776.1 flagellar motor switch protein FliG -
  M5E03_RS08160 (M5E03_08160) fliH 1593215..1593979 (+) 765 WP_252050422.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28976.19 Da        Isoelectric Point: 4.6467

>NTDB_id=689258 M5E03_RS08130 WP_007499612.1 1588314..1589093(+) (codY) [Bacillus safensis strain AHB11]
MALLQKTRIINSMLQDAAGKPVNFKEMAETLRDVIDSNIFVLSRRGKLLGYSINQQIENARMKKMLEDRQFPEEYTKSLF
NVPETSSNLDINSEYTAFPIENRDLFQSGLTTIVPIIGGGDRLGTLILSRLQDTFTDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=689258 M5E03_RS08130 WP_007499612.1 1588314..1589093(+) (codY) [Bacillus safensis strain AHB11]
ATGGCGTTACTACAAAAAACAAGGATTATTAACTCAATGCTGCAAGATGCAGCGGGGAAACCAGTTAATTTCAAAGAAAT
GGCAGAAACACTGAGAGATGTCATTGATTCAAACATTTTCGTATTAAGCAGAAGGGGAAAGCTTCTTGGCTACTCCATTA
ATCAACAGATCGAAAATGCACGTATGAAAAAAATGCTTGAAGATCGTCAGTTCCCTGAAGAATATACAAAGAGTCTATTC
AATGTCCCTGAAACGTCTTCAAACCTTGATATTAACAGCGAATATACAGCTTTCCCGATTGAAAACCGTGACTTATTCCA
ATCAGGTTTAACAACAATTGTTCCAATTATCGGCGGAGGAGATCGTTTAGGTACGTTAATCCTGTCCCGCTTACAAGATA
CATTCACAGATGATGATTTAATTCTTGCTGAATACGGGGCAACAGTTGTTGGAATGGAGATTCTTCGCGAGAAAGCAGAA
GAAATCGAAGAAGAAGCAAGAAGCAAAGCGGTTGTCCAAATGGCGATTAGCTCTCTTTCATATAGTGAGCTTGAAGCGAT
TGAGCACATTTTTGAAGAGCTGGATGGAAACGAAGGTCTTCTTGTCGCAAGTAAAATTGCAGATCGTGTAGGGATTACGC
GTTCAGTGATCGTAAACGCCTTACGTAAGTTAGAAAGTGCAGGCGTAATCGAATCTCGTTCTCTTGGAATGAAGGGAACG
TACATCAAAGTGTTAAACAACAAATTTTTAATTGAACTCGAAAATTTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

96.525

100

0.965
  codY Lactococcus lactis subsp. lactis strain DGCC12653

48.031

98.069

0.471