Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   M5E02_RS07790 Genome accession   NZ_CP097373
Coordinates   1533208..1533987 (+) Length   259 a.a.
NCBI ID   WP_007499612.1    Uniprot ID   A0A9X0FX88
Organism   Bacillus safensis strain AHB2     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1528208..1538987
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M5E02_RS07770 (M5E02_07770) trmFO 1528912..1530216 (+) 1305 WP_024424183.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  M5E02_RS07775 (M5E02_07775) xerC 1530279..1531196 (+) 918 WP_041108978.1 tyrosine recombinase XerC -
  M5E02_RS07780 (M5E02_07780) hslV 1531211..1531756 (+) 546 WP_024424181.1 ATP-dependent protease subunit HslV -
  M5E02_RS07785 (M5E02_07785) hslU 1531773..1533173 (+) 1401 WP_252058039.1 HslU--HslV peptidase ATPase subunit -
  M5E02_RS07790 (M5E02_07790) codY 1533208..1533987 (+) 780 WP_007499612.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  M5E02_RS07795 (M5E02_07795) flgB 1534275..1534664 (+) 390 WP_252058040.1 flagellar basal body rod protein FlgB -
  M5E02_RS07800 (M5E02_07800) flgC 1534664..1535116 (+) 453 WP_024424179.1 flagellar basal body rod protein FlgC -
  M5E02_RS07805 (M5E02_07805) fliE 1535128..1535445 (+) 318 WP_048239701.1 flagellar hook-basal body complex protein FliE -
  M5E02_RS07810 (M5E02_07810) fliF 1535495..1537087 (+) 1593 WP_073205172.1 flagellar basal-body MS-ring/collar protein FliF -
  M5E02_RS07815 (M5E02_07815) fliG 1537099..1538115 (+) 1017 WP_048239704.1 flagellar motor switch protein FliG -
  M5E02_RS07820 (M5E02_07820) fliH 1538108..1538872 (+) 765 WP_252058041.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28976.19 Da        Isoelectric Point: 4.6467

>NTDB_id=689198 M5E02_RS07790 WP_007499612.1 1533208..1533987(+) (codY) [Bacillus safensis strain AHB2]
MALLQKTRIINSMLQDAAGKPVNFKEMAETLRDVIDSNIFVLSRRGKLLGYSINQQIENARMKKMLEDRQFPEEYTKSLF
NVPETSSNLDINSEYTAFPIENRDLFQSGLTTIVPIIGGGDRLGTLILSRLQDTFTDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=689198 M5E02_RS07790 WP_007499612.1 1533208..1533987(+) (codY) [Bacillus safensis strain AHB2]
ATGGCGTTACTACAAAAAACAAGGATTATTAACTCAATGCTGCAAGATGCAGCGGGGAAACCAGTTAATTTCAAAGAAAT
GGCAGAAACACTCAGAGATGTCATTGATTCAAACATTTTCGTATTAAGCAGAAGGGGAAAGCTTCTTGGCTACTCCATTA
ATCAACAGATCGAAAATGCACGTATGAAAAAAATGCTTGAAGATCGTCAGTTCCCCGAAGAATATACAAAGAGTCTATTC
AATGTCCCTGAAACGTCTTCAAACCTTGATATTAACAGCGAATATACAGCTTTCCCGATTGAAAACCGTGACTTATTCCA
ATCAGGTTTAACAACAATTGTTCCAATTATCGGCGGAGGAGATCGTTTAGGTACGTTAATCCTGTCCCGTTTGCAAGATA
CATTCACAGATGATGATTTAATTCTTGCTGAATATGGAGCAACAGTTGTTGGAATGGAGATTCTTCGCGAGAAAGCAGAG
GAAATTGAAGAAGAAGCAAGAAGTAAAGCGGTTGTCCAAATGGCCATTAGTTCTCTTTCATATAGTGAGCTTGAAGCGAT
TGAGCACATTTTTGAAGAGCTGGATGGAAACGAAGGTCTTCTCGTTGCAAGTAAAATTGCAGATCGTGTAGGGATTACTC
GTTCAGTGATCGTAAACGCCTTACGTAAGTTAGAAAGTGCAGGCGTGATCGAATCTCGTTCTCTTGGAATGAAGGGAACG
TACATCAAAGTGTTAAACAACAAATTTTTAATTGAACTCGAAAATTTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

96.525

100

0.965
  codY Lactococcus lactis subsp. lactis strain DGCC12653

48.031

98.069

0.471