Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   M5598_RS14990 Genome accession   NZ_CP097355
Coordinates   3175378..3176103 (+) Length   241 a.a.
NCBI ID   WP_017449060.1    Uniprot ID   A0A4Z6AQU4
Organism   Vibrio parahaemolyticus strain 16-VB00198     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3170378..3181103
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M5598_RS14975 (M5598_14960) - 3171490..3173811 (+) 2322 WP_031818738.1 Tex family protein -
  M5598_RS14980 (M5598_14965) - 3173938..3174402 (-) 465 WP_021486912.1 hypothetical protein -
  M5598_RS14985 (M5598_14970) bioH 3174526..3175293 (-) 768 WP_031818739.1 pimeloyl-ACP methyl ester esterase BioH -
  M5598_RS14990 (M5598_14975) comF 3175378..3176103 (+) 726 WP_017449060.1 amidophosphoribosyltransferase Machinery gene
  M5598_RS14995 (M5598_14980) nfuA 3176201..3176785 (+) 585 WP_005458964.1 Fe-S biogenesis protein NfuA -
  M5598_RS15000 (M5598_14985) nudE 3177006..3177575 (+) 570 WP_005459019.1 ADP compounds hydrolase NudE -
  M5598_RS15005 (M5598_14990) cysQ 3177617..3178444 (+) 828 WP_017449059.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  M5598_RS15010 (M5598_14995) - 3178730..3179491 (-) 762 WP_029838295.1 type II secretion system protein N -
  M5598_RS15015 (M5598_15000) - 3179493..3179984 (-) 492 WP_005458943.1 type II secretion system protein M -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27725.91 Da        Isoelectric Point: 8.9991

>NTDB_id=688995 M5598_RS14990 WP_017449060.1 3175378..3176103(+) (comF) [Vibrio parahaemolyticus strain 16-VB00198]
MLSHHWQNIMHRVLSSQCGLCRFPILAAAQPNALRWCDHCYQYLTPVKRCQRCGLSLKAEEANIESICGECLSEPPPWQR
LFTLGDYDFPLSREVQRFKDHGQTWHVRALTQLLAQRISTPAPLITTVPLHWQRYFYRGFNQSDILARHLAGHLNVRFDN
HVFRRVKHVQSQRGYKKSSREQNLKGAFTLNQPPKYNHVAIVDDVVTTGSTVRQLCHLLLEVGVETVDIYCICRTPAPGA
V

Nucleotide


Download         Length: 726 bp        

>NTDB_id=688995 M5598_RS14990 WP_017449060.1 3175378..3176103(+) (comF) [Vibrio parahaemolyticus strain 16-VB00198]
ATGTTATCTCATCACTGGCAAAACATCATGCATCGTGTGCTCAGCAGTCAATGCGGTTTATGTCGCTTCCCGATTCTGGC
TGCCGCTCAACCCAATGCGCTGCGTTGGTGTGATCACTGTTATCAATATCTTACGCCAGTAAAACGCTGCCAACGTTGTG
GATTGAGCTTAAAAGCAGAGGAAGCGAATATAGAGAGTATTTGCGGCGAGTGCCTCTCCGAGCCTCCACCTTGGCAACGG
CTATTTACCTTGGGAGACTACGATTTTCCGCTGTCTCGAGAAGTACAACGCTTCAAAGATCACGGACAAACATGGCATGT
TCGCGCTTTAACGCAATTGCTTGCCCAGCGCATTTCAACTCCCGCTCCTCTTATCACCACAGTGCCTTTGCACTGGCAAC
GCTACTTTTATCGAGGCTTTAATCAGAGCGACATACTGGCGCGACATTTGGCTGGTCACCTTAATGTGAGGTTTGATAAT
CACGTGTTTCGCCGCGTAAAACACGTCCAGTCGCAGCGTGGGTACAAGAAATCCAGCCGAGAACAGAATTTAAAAGGCGC
TTTCACCTTAAATCAGCCACCAAAGTATAACCACGTCGCAATCGTAGATGATGTGGTCACGACGGGAAGCACGGTTCGAC
AATTATGTCATTTACTACTTGAAGTTGGCGTAGAAACCGTCGATATTTACTGCATCTGCAGAACCCCTGCTCCTGGTGCT
GTCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(146-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4Z6AQU4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

72.199

100

0.722
  comF Vibrio cholerae strain A1552

49.16

98.755

0.485