Detailed information NTG0688911

Bioinformatically predicted

Overview

• Name: recD2
• Type: Machinery gene
• Locus tag: M5V91_RS28220
• Genome accession: NZ_CP097349
• Coordinates: 5319460..5321886 (+)
• Length: 808 a.a.
• NCBI ID: WP_071156914.1
• Uniprot ID: -
• Organism: Cytobacillus pseudoceanisediminis strain BNO1
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 5314460..5326886

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
M5V91_RS28195 (M5V91_27925)	-	5315168..5315853 (+)	686	Protein_5521	YitT family protein	-
M5V91_RS28200 (M5V91_27930)	-	5315853..5316272 (+)	420	WP_009333072.1	cysteine metabolism transcriptional regulator CymR	-
M5V91_RS28205 (M5V91_27935)	-	5316341..5317483 (+)	1143	WP_009333071.1	cysteine desulfurase family protein	-
M5V91_RS28210 (M5V91_27940)	mnmA	5317540..5318655 (+)	1116	WP_019382899.1	tRNA 2-thiouridine(34) synthase MnmA	-
M5V91_RS28215 (M5V91_27945)	-	5318771..5319435 (+)	665	Protein_5525	tetratricopeptide repeat protein	-
M5V91_RS28220 (M5V91_27950)	recD2	5319460..5321886 (+)	2427	WP_071156914.1	ATP-dependent RecD-like DNA helicase	Machinery gene
M5V91_RS28225 (M5V91_27955)	-	5321949..5322110 (+)	162	WP_019382896.1	hypothetical protein	-
M5V91_RS28230 (M5V91_27960)	-	5322148..5322300 (+)	153	WP_009333066.1	hypothetical protein	-
M5V91_RS28235 (M5V91_27965)	-	5322402..5322872 (+)	471	WP_009333065.1	PRC-barrel domain-containing protein	-
M5V91_RS28240 (M5V91_27970)	-	5322888..5323078 (+)	191	Protein_5530	hypothetical protein	-
M5V91_RS28245 (M5V91_27975)	-	5323103..5323582 (+)	480	WP_284521638.1	YrzQ family protein	-
M5V91_RS28250 (M5V91_27980)	-	5323485..5324480 (+)	996	WP_284521639.1	AI-2E family transporter	-

Sequence

Protein

• Length: 808 a.a.
• Molecular weight: 91330.47 Da
• Isoelectric Point: 4.9779

>NTDB_id=688911 M5V91_RS28220 WP_071156914.1 5319460..5321886(+) (recD2) [Cytobacillus pseudoceanisediminis strain BNO1]
MEKQDSMDLFAEQGKFIKGRHLVTIFHNEQNLYTVVRIRVDETNDSYDEKEAVITGYLPKMHEQETYIFYGEFKDHPKFG
VQFHASHYRKDLPQTKQGVANYLSSELFKGIGKKTAEQIVETLGEDAITRILNQPSLLDKVPKLSPEKAKLLYDTLMEHQ
GLEQAMIALNQYGFGPQLSMRIYQVYKEMTIEVVQSNPYKLVEDIEGVGFGRADELGYQIGISGNHPDRIKAACLYILEM
ESMQAGHVYTEAKPLLQSVKKLLEENKRDSIEYRDISNELIKLEEEGKIMAEGQKIYLPSLYFSEKGLVTNIKRILKQTQ
YDEQFPESEFLLALGNLEERLGVQYAPTQKEAIQTALMSPMLILTGGPGTGKTTVIKGIVELYAELHGCSLEPKDYKKEE
PFPFLLAAPTGRAAKRMAESTGLPAVTIHRLLGWNGTEGFDRHEESPLEGRILIVDETSMVDVWLANQLFKALPENMQVI
LVGDEDQLPSVGPGQVLKDLLRSERIPTVRLTDIYRQAEGSSIIELAHEMKKGKLPANISAQQTDRSFIKCQPGQIADVV
EKVVLNAKKKGYSSKDIQVLAPMYRGPAGIDRLNEILQEILNPNPDGTRKELSFGDVKYRIGDKVLQLVNQPENNVFNGD
MGEIVSIFYAKENTEKQDMIVVSFDGAEATYTRQDLNQITHAYCCSVHKSQGSEFPIVILPIVKSYYRMLRRNLLYTAIT
RSRQFLILCGEEDALKIGVERADEQARLTTLSEKLRDAIPLNGETIQEDTAELSLPETLTLEERLLQADPMIGMGNITPY
DFMEKEYS

Nucleotide

• Length: 2427 bp

>NTDB_id=688911 M5V91_RS28220 WP_071156914.1 5319460..5321886(+) (recD2) [Cytobacillus pseudoceanisediminis strain BNO1]
ATGGAGAAACAGGATTCCATGGATCTTTTTGCCGAACAGGGAAAGTTCATAAAAGGCAGACATCTTGTCACAATCTTTCA
TAATGAGCAAAACTTATATACGGTTGTGCGAATCCGGGTTGATGAAACGAATGACTCTTATGATGAAAAAGAAGCGGTCA
TTACAGGTTATCTGCCAAAGATGCATGAGCAGGAAACGTATATTTTCTACGGTGAATTCAAGGATCACCCTAAGTTCGGT
GTCCAATTCCACGCAAGCCATTACCGGAAAGATCTTCCCCAGACCAAACAAGGTGTAGCCAATTATTTATCAAGCGAATT
ATTTAAAGGGATTGGAAAGAAAACCGCCGAGCAAATCGTTGAAACACTTGGCGAAGATGCGATTACACGCATTCTGAATC
AGCCGTCTCTTCTCGATAAGGTTCCAAAACTGTCACCTGAAAAAGCAAAATTGCTTTACGACACGCTTATGGAACATCAA
GGCCTTGAGCAAGCCATGATTGCGCTAAATCAATATGGTTTTGGTCCGCAGCTTTCCATGAGAATTTATCAAGTATATAA
AGAAATGACGATTGAAGTCGTCCAAAGCAATCCGTATAAGCTGGTTGAGGATATAGAAGGAGTCGGCTTTGGCCGTGCAG
ATGAACTGGGATATCAAATCGGCATATCAGGTAATCATCCTGATCGTATTAAAGCAGCCTGCCTCTACATACTTGAAATG
GAAAGCATGCAGGCAGGCCATGTTTATACTGAAGCAAAACCTCTTCTGCAAAGTGTGAAGAAGCTTTTAGAAGAAAATAA
GCGTGATAGCATTGAATACAGGGATATATCCAATGAACTGATTAAGCTTGAAGAGGAAGGGAAAATCATGGCTGAAGGCC
AAAAAATATACCTTCCATCCCTTTACTTTTCTGAAAAGGGACTTGTAACCAATATTAAACGGATCCTTAAGCAAACACAA
TATGATGAACAGTTTCCGGAGTCGGAATTTCTTTTGGCCCTTGGCAATCTGGAGGAACGTCTGGGTGTTCAGTACGCCCC
GACCCAAAAAGAAGCCATTCAAACAGCTCTTATGTCTCCTATGCTGATACTGACTGGCGGCCCTGGTACAGGAAAAACAA
CCGTTATTAAAGGAATTGTTGAGTTATATGCCGAACTGCATGGCTGCTCCCTGGAGCCAAAAGACTATAAAAAGGAAGAG
CCTTTTCCCTTCCTGCTGGCTGCGCCTACAGGAAGGGCTGCAAAACGGATGGCCGAGTCAACAGGGCTGCCTGCGGTAAC
CATTCACCGCCTGCTTGGCTGGAATGGGACCGAAGGGTTTGACCGGCATGAAGAGAGTCCATTGGAAGGCAGGATTTTAA
TTGTAGATGAGACATCAATGGTTGATGTTTGGCTTGCTAATCAGCTTTTCAAGGCTCTCCCTGAAAATATGCAGGTGATC
CTTGTGGGGGATGAAGATCAGCTGCCCTCAGTGGGGCCAGGCCAGGTTTTAAAAGATCTTTTGCGTTCAGAACGTATTCC
TACCGTTCGTTTAACAGATATATACAGGCAGGCTGAAGGATCCTCAATCATTGAATTGGCTCATGAAATGAAAAAAGGCA
AACTTCCGGCGAACATTTCTGCACAGCAGACAGATCGTTCCTTTATCAAATGCCAGCCGGGCCAAATTGCGGATGTTGTT
GAAAAAGTTGTTCTGAATGCCAAGAAGAAAGGTTATTCTTCAAAAGATATTCAGGTGCTTGCCCCTATGTACCGCGGACC
TGCAGGAATTGACAGGCTAAACGAAATATTGCAGGAAATACTAAATCCAAATCCTGATGGAACGAGAAAAGAGCTGTCCT
TCGGTGATGTGAAATACAGAATCGGCGATAAAGTCCTTCAGCTTGTCAATCAGCCTGAGAATAATGTGTTTAATGGGGAT
ATGGGTGAGATTGTTTCTATTTTTTACGCAAAGGAAAATACGGAAAAACAGGATATGATTGTCGTATCCTTCGATGGTGC
AGAAGCTACTTATACAAGGCAGGATCTTAATCAGATCACACATGCCTACTGCTGTTCAGTCCATAAATCCCAGGGAAGTG
AATTCCCTATCGTCATTTTGCCAATTGTTAAAAGCTATTACAGGATGCTTAGGAGAAATCTTCTTTATACCGCCATTACC
CGCAGCAGACAGTTTTTGATACTGTGCGGTGAAGAAGATGCGTTGAAAATCGGTGTGGAACGTGCGGATGAACAGGCCCG
ACTGACAACTCTTTCAGAAAAGCTTAGAGATGCCATTCCATTAAATGGTGAAACAATACAGGAAGATACAGCAGAGTTAT
CCCTGCCTGAAACCTTAACCCTTGAAGAAAGGCTTCTCCAAGCCGATCCAATGATAGGAATGGGAAATATAACACCGTAT
GATTTTATGGAAAAAGAATATAGCTAA

Domains

Predicted by InterproScan.

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (593-664)

• Helix-hairpin-helix containing domain (HHH_RecD2) (158-249)

• UvrD-like helicase C-terminal domain (UvrD_C_2) (681-729)

• AAA domain (AAA_30) (345-552)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD2	Bacillus subtilis subsp. subtilis str. 168	62.108	98.639	0.613