Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   Vir3643_RS11290 Genome accession   NZ_CP097347
Coordinates   2150132..2152447 (-) Length   771 a.a.
NCBI ID   WP_373892895.1    Uniprot ID   -
Organism   Virgibacillus sp. CBA3643     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2145132..2157447
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Vir3643_RS11275 (Vir3643_11215) alaS 2145274..2147913 (-) 2640 WP_373892892.1 alanine--tRNA ligase -
  Vir3643_RS11280 (Vir3643_11220) - 2148746..2149816 (-) 1071 WP_373892893.1 AI-2E family transporter -
  Vir3643_RS11285 (Vir3643_11225) - 2149866..2150057 (-) 192 WP_373892894.1 hypothetical protein -
  Vir3643_RS11290 (Vir3643_11230) recD2 2150132..2152447 (-) 2316 WP_373892895.1 ATP-dependent RecD-like DNA helicase Machinery gene
  Vir3643_RS11295 (Vir3643_11235) - 2152474..2153130 (-) 657 WP_373892896.1 tetratricopeptide repeat protein -
  Vir3643_RS11300 (Vir3643_11240) mnmA 2153147..2154259 (-) 1113 WP_373892897.1 tRNA 2-thiouridine(34) synthase MnmA -
  Vir3643_RS11305 (Vir3643_11245) - 2154275..2155414 (-) 1140 WP_373892898.1 cysteine desulfurase family protein -
  Vir3643_RS11310 (Vir3643_11250) cymR 2155450..2155869 (-) 420 WP_373892899.1 cysteine metabolism transcriptional regulator CymR -
  Vir3643_RS11315 (Vir3643_11255) - 2156012..2157295 (+) 1284 WP_373892900.1 replication-associated recombination protein A -

Sequence

Protein


Download         Length: 771 a.a.        Molecular weight: 87530.75 Da        Isoelectric Point: 4.9356

>NTDB_id=688852 Vir3643_RS11290 WP_373892895.1 2150132..2152447(-) (recD2) [Virgibacillus sp. CBA3643]
MELDRQSNEEKGYIKGELLYTIFHNEKEHFSIAKISVQDTNEDYKEKEIVGKGYFSNLQTQTTYIFYGDFERHPRFGLQY
KVLSYKTYIPDTKDGLIAYLSSDLFYGIGKKTAGRIVKHLGEDAVSKILNNSDVLADVPGLKKETADILAKRLQENQGFE
HIVVYLSKYGIGLKMAQKIFQEYKEDAISILEEDPYQYVFDIEGFGFQTADEIARQNGLSLSHPNRIGAGCIYVLQKSIQ
DGHVYLPLTHCIRQMLDLLSNNSLSEELITDRLNDLNTTKRIIIQEGNVYLPSLYYAEDGVASHLSRVIDKPVEENVTLA
DLMKIIGDIEDSEVLSYGKEQFAAINQALHSKVMILTGGPGTGKTTVIKGILNAYATINSLTLDPSDYDKETPFPFVLTA
PTGRAAKRLTESTGLPAVTIHRLLGWDGKNGFEKNQNEPLAGKFLIVDEFSMVDIWLANNLFKAIPDDMQVLIVGDEDQL
PSVGPGQVLSDLLKSERIPFVSLHEVYRQKEGSKIIHLAHEIKNDVEISLQNDKDFSFIPCNEQQMLDVIMTIFSKAIEK
GIDVKDIQVLAPMYRTQAGITMINKELQQLINPKTSRRREVKFNEVIYRVGDKVLQLVNQPEQGVYNGDIGEVAAIFEED
ENKENVEQLVILFEDKEVVYERKDYVNIMHAYCVSIHKSQGSEFPIVILPVVSTYNRMLRKNLLYTAITRSKESLIICGQ
EQAFLRGVRTMDTNKRYTNLKEQLTERIVDLPQAHTEESETEKEITPYDFM

Nucleotide


Download         Length: 2316 bp        

>NTDB_id=688852 Vir3643_RS11290 WP_373892895.1 2150132..2152447(-) (recD2) [Virgibacillus sp. CBA3643]
ATGGAATTAGATAGGCAATCTAATGAAGAAAAAGGGTATATAAAAGGTGAACTTCTCTATACGATTTTTCATAATGAAAA
AGAGCATTTTTCTATTGCGAAAATCAGTGTTCAAGACACGAATGAGGACTACAAAGAGAAAGAAATTGTTGGCAAAGGAT
ACTTTTCCAACCTTCAAACACAAACAACCTATATCTTCTATGGTGATTTCGAGCGACACCCCAGGTTCGGACTGCAATAT
AAAGTCTTGTCTTATAAAACATATATTCCTGACACAAAGGATGGTCTGATTGCCTATCTTTCCAGTGATTTATTTTATGG
AATTGGGAAGAAGACAGCAGGTCGTATTGTGAAGCATTTGGGTGAGGACGCGGTATCCAAAATTCTAAATAATTCAGATG
TGTTAGCAGATGTCCCAGGCTTAAAAAAAGAAACAGCAGATATATTGGCTAAGCGTCTCCAGGAAAATCAGGGATTTGAA
CATATTGTTGTTTATTTATCCAAATACGGTATCGGTTTAAAAATGGCTCAAAAAATATTTCAGGAATATAAGGAAGATGC
GATTTCTATTTTGGAAGAGGACCCTTACCAGTATGTTTTCGATATTGAAGGGTTTGGATTTCAAACAGCAGATGAGATAG
CGAGACAAAACGGTCTTTCCTTGTCACATCCAAACCGCATTGGTGCCGGGTGTATTTATGTCCTGCAAAAAAGCATTCAG
GATGGACACGTTTATTTACCACTGACGCATTGCATCAGGCAAATGTTGGACTTGCTTTCGAACAACTCCTTATCAGAGGA
ACTGATTACAGATAGATTGAATGATTTAAATACAACGAAACGGATTATTATCCAGGAAGGGAATGTCTATCTGCCATCAC
TCTACTATGCAGAGGATGGGGTTGCATCCCATTTAAGTCGGGTTATTGATAAACCGGTGGAAGAAAACGTGACACTAGCT
GACTTAATGAAAATAATCGGTGATATAGAGGATAGTGAAGTATTAAGTTATGGGAAAGAGCAATTTGCGGCTATTAACCA
AGCACTGCACTCCAAAGTTATGATTCTTACAGGGGGACCGGGAACAGGGAAAACAACGGTTATTAAAGGTATTCTTAATG
CGTATGCTACGATTAATAGTCTCACTCTGGACCCTAGTGATTATGACAAAGAAACACCGTTTCCTTTTGTCCTAACTGCA
CCGACAGGACGGGCTGCAAAACGTTTGACTGAATCGACAGGTCTTCCCGCTGTTACCATCCATCGTCTGCTAGGCTGGGA
CGGGAAGAATGGATTTGAAAAAAATCAGAATGAGCCGTTGGCAGGGAAGTTTTTAATTGTTGATGAATTCTCCATGGTAG
ACATTTGGTTAGCCAATAATCTATTCAAAGCAATACCGGATGACATGCAAGTTCTAATTGTAGGGGATGAGGATCAGCTC
CCATCGGTAGGCCCGGGACAAGTTTTATCCGATTTATTAAAGAGTGAACGTATTCCATTTGTGAGCCTTCATGAGGTATA
CCGTCAAAAAGAAGGTTCCAAGATTATTCATCTTGCACATGAAATTAAAAATGACGTTGAAATATCATTGCAAAATGATA
AAGATTTCAGTTTTATTCCATGCAATGAACAACAGATGCTTGATGTGATAATGACCATTTTTTCAAAAGCGATCGAAAAA
GGGATTGACGTTAAAGATATTCAAGTGCTGGCACCAATGTATCGCACTCAAGCAGGAATAACGATGATCAACAAAGAGCT
TCAGCAGCTGATAAATCCAAAGACATCCAGAAGAAGAGAAGTAAAATTTAACGAGGTTATCTACCGGGTTGGTGATAAAG
TGCTGCAGCTTGTCAATCAACCGGAACAAGGGGTATATAACGGGGATATTGGTGAGGTTGCTGCTATCTTTGAGGAAGAT
GAAAATAAGGAAAACGTTGAACAACTAGTCATTTTATTTGAAGATAAAGAAGTAGTTTATGAGCGTAAAGATTATGTGAA
TATCATGCATGCGTATTGTGTATCGATTCATAAATCACAGGGAAGCGAATTTCCGATTGTTATCCTGCCTGTTGTCTCTA
CGTATAATCGCATGCTACGGAAGAATCTGCTCTATACTGCAATCACAAGAAGCAAAGAGTCACTGATTATTTGCGGCCAA
GAGCAAGCATTCCTGCGAGGGGTGCGGACAATGGATACAAATAAGCGATATACAAATTTAAAAGAGCAATTAACAGAGAG
GATCGTGGATCTTCCACAAGCTCACACTGAGGAGTCAGAAACGGAAAAAGAAATTACGCCATATGATTTTATGTGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(155-245)

Helix-hairpin-helix domain (HHH_5)

(107-150)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(583-652)

AAA domain (AAA_30)

(337-535)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(670-718)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

48.167

100

0.494