Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   BBTM_RS10010 Genome accession   NZ_AP018132
Coordinates   1619944..1621884 (+) Length   646 a.a.
NCBI ID   WP_047297914.1    Uniprot ID   -
Organism   Bifidobacterium bifidum strain TMC 3115     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1614944..1626884
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BBTM_RS06875 (BBTM_02083) - 1615389..1616381 (+) 993 WP_042995908.1 aldo/keto reductase -
  BBTM_RS06885 - 1616768..1617121 (-) 354 WP_229029640.1 DUF1778 domain-containing protein -
  BBTM_RS06890 (BBTM_02087) - 1617261..1617791 (+) 531 Protein_1331 MarR family winged helix-turn-helix transcriptional regulator -
  BBTM_RS06895 (BBTM_02090) rcrP 1618010..1619893 (+) 1884 WP_013389447.1 ABC transporter ATP-binding protein Regulator
  BBTM_RS10010 (BBTM_02093) rcrQ 1619944..1621884 (+) 1941 WP_047297914.1 ABC transporter ATP-binding protein Regulator

Sequence

Protein


Download         Length: 646 a.a.        Molecular weight: 70414.15 Da        Isoelectric Point: 6.5754

>NTDB_id=68872 BBTM_RS10010 WP_047297914.1 1619944..1621884(+) (rcrQ) [Bifidobacterium bifidum strain TMC 3115]
MGGGRTVEKPANFGNVMGKLVHYCRNYLPVIIIALVLGAAGTICQIIGPDKLKDMTNEIVKGLPAIVNGKPVMNSVDFNA
VGRIAWLLVALYVGYAVLSYVQSWMMANVTQRTAQRLRESISVKINKLPLKYFDKVSYGDVLSRITNDVDAIGQTLGQSL
GSLITSATLFVGALVMMFYNNVIMTLCAIGASILGLIIMMVIMKSSQKYFARQQMALGDVNGHIEEMYAGHLIVKAYNGE
ADSIRRFEKYNADLYESGWKSQFLSGLMMPLMNFVGNFGYVIVCVVGAALAMDGQIEFGVIVAFMMYIRLFTQPLSQFAQ
AFQNLQRCAAAAERVFGFLEEPEMDAEPTKAELGVADAAASTARTDSGKLAHRGTRANATAGMTASQRSQLLGYDAAGNP
RTVRGDVEFSHVRFGYEPGKPIIHDFSASVSAGQKVAIVGPTGAGKTTMVNLLMRFYEISGGSISIDGIDTTSVPRWNVH
DQFSMVLQDTWVFRGTVRENIAYSKPGVTDEQIVSACKAVGLDHFVRSLPRGYDTVLDDNTSLSQGQRQLLTIARAMVQD
APILILDEATSSVDTRTEELIQKAMDALTVGRTSFVIAHRLSTIRDADMILVMNHGDVIERGTHEELLAAGGFYADLYNS
QFTLTD

Nucleotide


Download         Length: 1941 bp        

>NTDB_id=68872 BBTM_RS10010 WP_047297914.1 1619944..1621884(+) (rcrQ) [Bifidobacterium bifidum strain TMC 3115]
ATGGGCGGCGGCCGCACGGTCGAAAAGCCTGCCAATTTCGGCAACGTGATGGGCAAGCTCGTCCACTACTGCCGCAACTA
CCTGCCCGTCATCATCATTGCGCTCGTGCTGGGCGCGGCCGGCACGATATGCCAGATCATCGGACCGGACAAACTCAAGG
ACATGACCAACGAGATCGTCAAGGGACTGCCGGCCATCGTGAACGGCAAGCCGGTGATGAACTCGGTCGATTTCAACGCC
GTCGGCCGCATCGCCTGGCTGCTCGTCGCACTGTACGTCGGCTACGCGGTGCTCAGCTACGTGCAAAGCTGGATGATGGC
GAACGTCACCCAGCGCACCGCCCAGCGCCTGCGCGAATCGATCTCGGTCAAAATCAACAAGCTGCCGCTCAAATACTTCG
ACAAGGTCAGCTACGGCGACGTACTCTCCCGCATCACCAACGACGTCGACGCCATCGGCCAGACGCTCGGCCAGTCCCTC
GGCTCGCTCATCACCTCGGCGACGCTGTTCGTTGGCGCGCTCGTCATGATGTTCTACAACAACGTCATCATGACCCTGTG
CGCGATCGGCGCGAGCATACTGGGACTCATCATCATGATGGTCATCATGAAATCCTCGCAGAAATACTTCGCCCGCCAGC
AGATGGCGCTCGGCGACGTCAACGGCCACATCGAGGAGATGTACGCCGGTCACCTCATCGTCAAGGCGTACAACGGCGAG
GCCGACTCAATCCGCCGCTTTGAGAAGTACAACGCCGACCTGTACGAATCCGGCTGGAAATCGCAGTTCCTGTCAGGCCT
GATGATGCCGCTGATGAACTTCGTCGGCAACTTCGGCTACGTGATCGTGTGCGTGGTCGGTGCAGCGCTCGCCATGGACG
GGCAGATCGAATTCGGCGTGATCGTCGCGTTCATGATGTACATCCGCCTGTTCACCCAGCCGTTGAGCCAGTTCGCGCAG
GCGTTCCAGAACCTGCAGCGATGCGCGGCCGCCGCCGAGCGCGTGTTCGGCTTCCTCGAAGAGCCGGAGATGGATGCGGA
ACCGACCAAGGCCGAACTCGGCGTGGCTGATGCCGCCGCGAGCACGGCACGGACGGACAGCGGCAAGCTGGCGCATCGCG
GCACTCGCGCGAATGCCACCGCCGGTATGACGGCTTCGCAGCGTTCGCAGCTGCTCGGCTACGATGCGGCCGGCAACCCC
CGGACCGTGCGCGGCGATGTCGAATTCAGTCACGTGCGATTCGGCTATGAGCCCGGCAAGCCGATCATCCACGACTTCTC
GGCAAGCGTCTCCGCCGGCCAGAAAGTCGCCATCGTCGGTCCGACCGGCGCCGGCAAAACCACCATGGTCAACCTGCTGA
TGCGCTTCTACGAGATCTCCGGCGGCTCCATCTCCATCGACGGCATCGACACCACTTCCGTGCCGCGCTGGAACGTACAC
GACCAGTTCTCCATGGTCCTGCAGGATACATGGGTGTTCCGTGGCACCGTGCGCGAAAACATCGCCTACTCCAAGCCCGG
CGTCACCGACGAGCAGATCGTCTCCGCATGCAAGGCCGTCGGACTCGACCACTTCGTGCGCTCTCTGCCGCGGGGCTACG
ACACCGTGCTCGACGACAACACCTCGCTCTCCCAAGGACAGCGCCAGTTGCTCACCATCGCCCGCGCCATGGTGCAGGAC
GCTCCGATCCTCATCCTTGACGAAGCCACCTCCTCCGTCGACACCCGCACCGAAGAACTCATCCAAAAGGCCATGGATGC
GTTGACCGTGGGGCGCACGAGCTTCGTCATCGCGCACCGCCTCTCCACCATCCGCGACGCCGACATGATTCTCGTCATGA
ACCACGGCGACGTGATCGAGCGCGGTACCCACGAGGAACTGCTCGCGGCGGGAGGGTTTTACGCCGACCTCTACAACAGC
CAATTCACACTCACCGATTGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(424-571)

ABC transporter transmembrane region (ABC_membrane)

(32-315)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

50.238

97.368

0.489

Multiple sequence alignment