Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   OS088_RS04415 Genome accession   NZ_CP113051
Coordinates   854385..855158 (+) Length   257 a.a.
NCBI ID   WP_000055337.1    Uniprot ID   P63843
Organism   Staphylococcus aureus strain Viktor     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 849385..860158
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OS088_RS04395 trmFO 849729..851036 (+) 1308 WP_267814809.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  OS088_RS04400 xerC 851453..852349 (+) 897 WP_154283919.1 tyrosine recombinase XerC -
  OS088_RS04405 hslV 852346..852891 (+) 546 WP_000072681.1 ATP-dependent protease subunit HslV -
  OS088_RS04410 hslU 852957..854360 (+) 1404 WP_000379054.1 ATP-dependent protease ATPase subunit HslU -
  OS088_RS04415 codY 854385..855158 (+) 774 WP_000055337.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  OS088_RS04420 - 855209..855301 (+) 93 WP_001790530.1 hypothetical protein -
  OS088_RS04425 rpsB 855500..856267 (+) 768 WP_000268484.1 30S ribosomal protein S2 -
  OS088_RS04430 - 856301..856414 (+) 114 WP_001789890.1 hypothetical protein -
  OS088_RS04435 tsf 856449..857330 (+) 882 WP_267814812.1 translation elongation factor Ts -
  OS088_RS04440 pyrH 857467..858189 (+) 723 WP_000057330.1 UMP kinase -
  OS088_RS04445 frr 858208..858762 (+) 555 WP_001280006.1 ribosome recycling factor -
  OS088_RS04450 - 859135..859905 (+) 771 WP_154283921.1 isoprenyl transferase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28755.13 Da        Isoelectric Point: 6.0680

>NTDB_id=688526 OS088_RS04415 WP_000055337.1 854385..855158(+) (codY) [Staphylococcus aureus strain Viktor]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENRELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=688526 OS088_RS04415 WP_000055337.1 854385..855158(+) (codY) [Staphylococcus aureus strain Viktor]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGGTCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATTCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCAT
AGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTACTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACTATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCAAT
TGAACATATCTTTGAAGAACTAGGCGGTACGGAAGGTCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTCATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAATAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P63843

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

64.202

100

0.642
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.802

100

0.428