Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   OS089_RS03240 Genome accession   NZ_CP113049
Coordinates   668241..669014 (-) Length   257 a.a.
NCBI ID   WP_000055337.1    Uniprot ID   P63843
Organism   Staphylococcus aureus strain Ahri     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 663241..674014
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OS089_RS03205 - 663494..664264 (-) 771 WP_000473705.1 isoprenyl transferase -
  OS089_RS03210 frr 664637..665191 (-) 555 WP_001280006.1 ribosome recycling factor -
  OS089_RS03215 pyrH 665210..665932 (-) 723 WP_000057330.1 UMP kinase -
  OS089_RS03220 tsf 666069..666950 (-) 882 WP_000201386.1 translation elongation factor Ts -
  OS089_RS03225 - 666985..667098 (-) 114 WP_031845108.1 hypothetical protein -
  OS089_RS03230 rpsB 667132..667899 (-) 768 WP_267811034.1 30S ribosomal protein S2 -
  OS089_RS03235 - 668098..668190 (-) 93 WP_031788481.1 hypothetical protein -
  OS089_RS03240 codY 668241..669014 (-) 774 WP_000055337.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  OS089_RS03245 hslU 669039..670442 (-) 1404 WP_000379054.1 ATP-dependent protease ATPase subunit HslU -
  OS089_RS03250 hslV 670508..671053 (-) 546 WP_000072681.1 ATP-dependent protease subunit HslV -
  OS089_RS03255 xerC 671050..671946 (-) 897 WP_267814024.1 tyrosine recombinase XerC -
  OS089_RS03260 trmFO 672364..673671 (-) 1308 WP_267811032.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28755.13 Da        Isoelectric Point: 6.0680

>NTDB_id=688437 OS089_RS03240 WP_000055337.1 668241..669014(-) (codY) [Staphylococcus aureus strain Ahri]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENRELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=688437 OS089_RS03240 WP_000055337.1 668241..669014(-) (codY) [Staphylococcus aureus strain Ahri]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGGTCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATTCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTTTTCCCACCTGAAAACAGAGAATTATTCAT
AGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGAGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTACTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCAAT
TGAACATATCTTTGAAGAACTTGGCGGTACAGAAGGCCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTCATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAGTAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P63843

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

64.202

100

0.642
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.802

100

0.428