Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   M2M59_RS10090 Genome accession   NZ_CP097314
Coordinates   2017546..2019903 (-) Length   785 a.a.
NCBI ID   WP_249774502.1    Uniprot ID   -
Organism   Rummeliibacillus sp. G93     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2012546..2024903
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M2M59_RS10075 (M2M59_10075) dtd 2014225..2014671 (-) 447 WP_249774501.1 D-aminoacyl-tRNA deacylase -
  M2M59_RS10080 (M2M59_10080) - 2014690..2016882 (-) 2193 WP_150284688.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  M2M59_RS10085 (M2M59_10085) - 2017043..2017555 (-) 513 WP_066788449.1 adenine phosphoribosyltransferase -
  M2M59_RS10090 (M2M59_10090) recJ 2017546..2019903 (-) 2358 WP_249774502.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  M2M59_RS10095 (M2M59_10095) - 2020024..2021439 (-) 1416 WP_249774503.1 S8 family serine peptidase -
  M2M59_RS10100 (M2M59_10100) secDF 2021573..2023840 (-) 2268 WP_147195778.1 protein translocase subunit SecDF -
  M2M59_RS10105 (M2M59_10105) - 2024380..2024679 (-) 300 WP_066788457.1 post-transcriptional regulator -

Sequence

Protein


Download         Length: 785 a.a.        Molecular weight: 88960.25 Da        Isoelectric Point: 4.7458

>NTDB_id=688371 M2M59_RS10090 WP_249774502.1 2017546..2019903(-) (recJ) [Rummeliibacillus sp. G93]
MTATEKRWRINRPDERLVEMLEKELRLSPISAKILVARGFDTVESARAFLMVDEHSVHDPYDLYGMHDAVDRIKQAIQNK
EKVLIYGDYDADGITSTTVLKTALVDLGADVHHIIPNRFIDGYGPSERLFRQAYEDGFQLIITVDNGIAGNHEVQVAKEL
GMDIIVTDHHEPGEELPNADVIIHPRHPDGHYPFGELAGVGVAFKVAHALYGELPQHLLPFVAIGTVADLVPLLDENRYL
VKAGIEALQQSKQPAIQALCQIAGVKAQDIDEETIGFGFAPRLNALGRLGDAAPGVDFLMTQDKEEAQSMANYLNEQNKE
RQAIVANITEQAIEMVENDPEIGDAKVLVLADEGWNPGVVGIVASRLVERYYKPAIILSIDLEKGTAKGSARSIEGFHMY
KELAKNSEILLAFGGHPMAAGMTLAVEEIDELRIRLDEQARAGLTDEDFTPVLNIDIPLAVEEIDVTSIEDVRRLSPFGT
SFAKPVYAIENATIQSMRKIGADENHIKLQIASRNGDLDAVGFHKGYLADELTYGIKINFAGDLQINEWNGRKKPQLMLA
DVQTDEWQLFDLRGIRQVSRWLQSIPLEKVTFIAFQNRTLQYFDSLIPAEIMIYEEKMTPQQIESYVVLLDLPTNASLLE
KLLEEANPRRVYAHFYIPESHYFDAMPTREQFVWYYSFLKKRRTFHLREHLMELAKHKGWSRDSLIFMTQVFFELGFVTI
ENGLAQIVDNPPKKDLTSANIYQERQQQMELEQTLLYAPYKDLREWFDSRMKSQTVSEEEHSKWI

Nucleotide


Download         Length: 2358 bp        

>NTDB_id=688371 M2M59_RS10090 WP_249774502.1 2017546..2019903(-) (recJ) [Rummeliibacillus sp. G93]
ATGACAGCAACAGAGAAGAGATGGCGTATCAATCGCCCTGATGAACGACTTGTGGAAATGCTAGAAAAAGAGCTTCGTTT
ATCACCTATCTCAGCTAAAATATTAGTCGCACGCGGTTTTGACACTGTTGAATCTGCGCGTGCTTTTTTAATGGTCGATG
AACATTCAGTACACGATCCTTACGATTTGTATGGTATGCACGATGCAGTAGATCGTATAAAACAAGCGATACAAAATAAA
GAAAAAGTTTTAATATATGGAGACTATGACGCCGATGGCATTACAAGCACTACGGTTCTAAAAACGGCTTTAGTAGATTT
GGGAGCTGATGTCCATCACATTATTCCTAATCGTTTTATTGATGGATATGGACCAAGTGAGCGATTGTTTCGACAAGCAT
ATGAAGATGGATTTCAGCTGATTATTACTGTCGATAATGGAATCGCGGGCAATCATGAAGTGCAAGTCGCTAAAGAGTTG
GGGATGGATATCATAGTGACAGATCACCATGAGCCTGGTGAAGAGTTGCCTAATGCAGATGTGATTATCCATCCGAGACA
TCCGGATGGCCATTATCCTTTTGGAGAGCTTGCTGGTGTTGGGGTAGCATTTAAAGTAGCACATGCTCTCTACGGTGAGT
TGCCGCAACATCTCCTCCCCTTTGTCGCGATTGGTACAGTTGCCGATTTGGTGCCATTATTGGATGAAAATCGTTATTTA
GTGAAAGCGGGAATAGAAGCGCTTCAACAATCTAAACAACCTGCTATTCAAGCACTTTGCCAAATTGCTGGTGTTAAAGC
ACAAGATATTGATGAAGAGACAATTGGTTTTGGTTTTGCACCACGGCTAAATGCATTAGGCAGACTCGGAGATGCTGCAC
CGGGGGTCGACTTCTTAATGACGCAGGATAAAGAAGAAGCGCAGTCTATGGCGAACTATTTAAATGAACAAAATAAAGAA
CGACAAGCAATCGTGGCGAACATTACCGAGCAGGCAATTGAAATGGTGGAGAATGATCCTGAGATTGGCGATGCAAAAGT
ACTAGTCCTAGCTGATGAAGGATGGAACCCAGGTGTTGTTGGTATAGTCGCATCAAGGCTTGTAGAAAGATACTATAAAC
CGGCAATCATACTCTCAATAGATCTCGAAAAAGGGACTGCTAAAGGTTCTGCCCGCAGTATTGAAGGCTTCCATATGTAT
AAGGAGCTTGCGAAAAATAGCGAAATATTGCTAGCATTTGGCGGTCATCCAATGGCAGCAGGAATGACACTTGCTGTAGA
AGAAATTGACGAGCTCCGCATCCGCCTTGATGAACAAGCGAGGGCAGGTTTAACAGATGAAGACTTCACTCCAGTCCTAA
ATATTGATATTCCGCTTGCTGTAGAGGAAATTGACGTTACTTCTATTGAAGATGTACGTCGTTTGTCTCCATTTGGTACT
AGTTTTGCAAAGCCTGTCTATGCGATTGAAAATGCGACAATCCAGTCAATGCGCAAAATTGGAGCAGACGAGAATCATAT
CAAACTCCAAATCGCATCCAGGAATGGCGATTTAGATGCAGTTGGTTTTCATAAAGGATATTTGGCTGATGAATTGACGT
ATGGCATTAAAATAAATTTTGCAGGCGATTTGCAGATCAACGAGTGGAATGGCCGGAAAAAACCCCAGCTTATGCTTGCA
GATGTCCAAACAGATGAATGGCAATTATTTGATCTACGGGGCATCCGCCAAGTTTCGAGATGGCTTCAAAGTATTCCTTT
AGAAAAAGTTACATTTATCGCTTTTCAAAACAGAACCCTGCAGTATTTTGATTCCCTCATACCTGCTGAAATAATGATTT
ATGAAGAAAAAATGACTCCGCAGCAAATAGAAAGCTATGTTGTGCTGCTCGATTTACCAACAAACGCTTCACTGCTTGAA
AAATTATTAGAAGAAGCAAATCCAAGACGTGTTTATGCCCATTTTTATATTCCAGAGTCACATTACTTTGATGCTATGCC
AACAAGAGAACAATTTGTTTGGTACTATTCCTTCTTAAAGAAAAGGCGTACATTCCATCTGAGAGAGCATTTAATGGAAT
TGGCAAAACATAAAGGCTGGAGCCGTGATTCGTTAATTTTTATGACACAGGTGTTTTTTGAACTAGGATTTGTTACAATA
GAAAATGGTCTCGCTCAAATTGTGGACAATCCACCGAAAAAGGATTTAACAAGCGCGAACATTTATCAAGAACGGCAGCA
GCAAATGGAATTGGAACAAACTTTATTGTATGCGCCTTATAAGGATTTAAGAGAGTGGTTTGACTCGCGGATGAAGAGTC
AAACAGTTTCTGAGGAGGAACATAGCAAATGGATTTAA

Domains

Predicted by InterproScan.

RecJ OB domain (RecJ_OB)

(455-561)

DHH family (DHH)

(82-226)

DHHA1 domain (DHHA1)

(315-438)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(568-767)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

49.424

99.49

0.492