Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   M2M59_RS06070 Genome accession   NZ_CP097314
Coordinates   1226355..1228811 (+) Length   818 a.a.
NCBI ID   WP_249775765.1    Uniprot ID   -
Organism   Rummeliibacillus sp. G93     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1221355..1233811
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M2M59_RS06050 (M2M59_06050) cymR 1222805..1223224 (+) 420 WP_066786159.1 cysteine metabolism transcriptional regulator CymR -
  M2M59_RS06055 (M2M59_06055) - 1223378..1224520 (+) 1143 WP_249775762.1 cysteine desulfurase family protein -
  M2M59_RS06060 (M2M59_06060) mnmA 1224540..1225661 (+) 1122 WP_249775763.1 tRNA 2-thiouridine(34) synthase MnmA -
  M2M59_RS06065 (M2M59_06065) - 1225675..1226334 (+) 660 WP_249775764.1 lipopolysaccharide assembly protein LapB -
  M2M59_RS06070 (M2M59_06070) recD2 1226355..1228811 (+) 2457 WP_249775765.1 ATP-dependent RecD-like DNA helicase Machinery gene
  M2M59_RS06075 (M2M59_06075) alaS 1229128..1231791 (+) 2664 WP_249775766.1 alanine--tRNA ligase -
  M2M59_RS06080 (M2M59_06080) - 1231865..1232131 (+) 267 WP_147193895.1 IreB family regulatory phosphoprotein -
  M2M59_RS06085 (M2M59_06085) ruvX 1232134..1232553 (+) 420 WP_147195078.1 Holliday junction resolvase RuvX -
  M2M59_RS06090 (M2M59_06090) - 1232563..1232850 (+) 288 WP_147193893.1 DUF1292 domain-containing protein -
  M2M59_RS06095 (M2M59_06095) - 1232975..1233268 (+) 294 WP_066786187.1 DUF1292 domain-containing protein -

Sequence

Protein


Download         Length: 818 a.a.        Molecular weight: 91068.91 Da        Isoelectric Point: 4.7085

>NTDB_id=688363 M2M59_RS06070 WP_249775765.1 1226355..1228811(+) (recD2) [Rummeliibacillus sp. G93]
MAENLSLFSDEPLFIVGRPVVTIFHNAQNLFSIIKLKIQETNTDYKEKEIIVAGYFPAVSEEALYRYTGQLKQHPKYGLQ
FQAATFEKEIPATETGVVQYLSSDLFPGIGHRTAETIVQQLGADAIKTIIENPDVLDDVPRLTEDKKQTLRSVLEQNLGL
DRIMIQLNEWGFGAQIAVKIYQMYEGETLQVLQKNPYRLIEDIEGIGFQRADELGARLQITGNHPDRIKASILHLLNTAS
LSEGHVFLDAREILPASKAMLESSQSCTIEYDDISQAIIELGENGKVCGEETRVYLPSLYYSEIGIASKITELAQKNEEQ
SSFPSSEIRKVIGEAEERFGVTYADTQVKAIETAINSAVMILTGGPGTGKTTVVRGIVDVYAELHGLSLNPKDYAEKEEA
FPIVLAAPTGRAAKRLSESTELPAMTIHRLLGFTGQEKEEDVEREVMGRLIIVDEMSMVDTWLAHQLLRALNDDCQVIFV
GDQDQLPPVGPGQVLKDLLASKAIPTVELTDVYRQSEGSSIIQLAHEMKRGTVPQDLMVKTSDRSFIRATQDQIADVVGQ
VVKSAINKGFSIHDVQVLAPMYRGNAGIDAMNKMLQELLNPKKNQKTKEIAFGDTIYRIGDKVLQLVNQPNNNVFNGDMG
EVISIVKAKETIEKTDLMVVSFDGIEVTYQKSDLNQVTLAYCCSIHKSQGSEFPMVIMPIVRGYSKMLRKNLLYTGITRA
KNFLILCGEPDTFVYGFQKTDDMKRHTSLVERLSLDETTEIKSLEEKNDTKTESTEKEAIQSVEDKLPVALTLDNYSGIH
PMIGMAGISPYDFMNNEN

Nucleotide


Download         Length: 2457 bp        

>NTDB_id=688363 M2M59_RS06070 WP_249775765.1 1226355..1228811(+) (recD2) [Rummeliibacillus sp. G93]
TTGGCTGAAAATCTATCTTTGTTTTCCGATGAACCACTTTTTATTGTCGGCCGGCCTGTCGTCACAATATTTCATAATGC
ACAAAACTTATTCTCGATTATTAAATTGAAAATCCAGGAAACAAATACGGATTATAAAGAAAAAGAGATTATTGTCGCAG
GCTATTTTCCTGCTGTCTCAGAAGAAGCGTTATACCGTTATACAGGGCAGCTGAAACAGCATCCTAAATATGGGCTGCAG
TTTCAAGCTGCCACTTTTGAAAAAGAGATTCCAGCAACTGAAACAGGTGTCGTGCAATATTTATCTAGCGATTTATTTCC
GGGGATAGGCCACCGTACAGCTGAAACGATTGTTCAACAGCTAGGTGCAGATGCTATTAAAACCATTATTGAAAATCCTG
ATGTGTTGGATGACGTTCCACGCTTAACAGAAGATAAAAAACAAACACTGCGCTCGGTACTTGAGCAAAATTTAGGACTT
GACCGCATTATGATTCAGTTGAACGAATGGGGATTTGGTGCTCAAATTGCTGTGAAGATTTATCAAATGTATGAAGGTGA
GACACTACAAGTACTACAAAAAAATCCATACCGCCTCATTGAAGATATTGAGGGGATCGGTTTTCAGCGAGCGGATGAAC
TGGGCGCTAGGCTACAAATCACCGGCAACCATCCCGACCGCATCAAGGCCTCTATACTTCACTTGTTAAACACTGCCTCG
TTATCAGAAGGGCATGTTTTTTTAGATGCAAGAGAAATTTTGCCTGCTTCCAAGGCGATGCTTGAATCGAGTCAGTCATG
CACGATTGAATACGATGATATTTCCCAAGCAATAATTGAACTAGGCGAGAATGGTAAAGTATGCGGTGAAGAAACAAGAG
TTTATTTGCCGTCTCTTTATTATTCTGAAATAGGAATTGCTTCGAAGATTACAGAGCTAGCTCAAAAAAATGAAGAGCAA
TCATCTTTTCCTTCTTCTGAGATAAGAAAAGTAATCGGTGAAGCAGAAGAGCGCTTTGGTGTTACATATGCTGATACACA
AGTAAAGGCAATTGAAACGGCTATTAATTCAGCTGTAATGATTTTAACGGGGGGCCCCGGAACGGGGAAAACAACAGTTG
TCAGGGGAATAGTGGATGTCTATGCAGAACTTCATGGGCTCTCGCTAAACCCTAAAGATTATGCAGAGAAAGAAGAGGCC
TTTCCAATCGTTCTAGCGGCTCCTACAGGTAGAGCTGCCAAGCGCTTAAGCGAATCAACGGAACTGCCTGCAATGACTAT
TCATCGCTTGTTAGGTTTCACGGGTCAAGAAAAGGAAGAAGATGTGGAGCGAGAAGTAATGGGGCGGCTTATTATAGTCG
ATGAAATGTCAATGGTTGATACATGGCTCGCACATCAACTTTTGAGGGCATTGAATGATGACTGCCAAGTAATATTTGTA
GGCGACCAAGACCAACTTCCGCCGGTAGGTCCAGGACAGGTTTTAAAGGATCTGCTTGCCTCAAAAGCCATTCCAACAGT
GGAGTTAACAGATGTTTATAGGCAATCAGAAGGGTCATCAATAATTCAGTTGGCACATGAAATGAAACGTGGTACTGTCC
CTCAAGACTTGATGGTGAAAACAAGTGACCGTTCATTTATACGTGCAACCCAAGATCAAATTGCAGACGTTGTAGGGCAA
GTGGTCAAGAGTGCTATTAATAAAGGTTTTTCTATTCATGACGTCCAAGTGCTCGCACCAATGTATCGTGGCAATGCGGG
CATTGATGCAATGAACAAAATGCTACAAGAATTACTAAATCCCAAAAAAAACCAAAAGACAAAAGAGATTGCCTTTGGTG
ATACGATTTACCGGATTGGCGATAAAGTGCTACAACTTGTTAATCAGCCAAATAACAATGTGTTTAATGGCGATATGGGT
GAAGTCATTTCAATTGTGAAGGCAAAAGAAACGATTGAAAAAACGGATTTAATGGTTGTATCGTTTGATGGCATTGAAGT
AACGTATCAAAAAAGTGATCTAAATCAGGTAACGCTTGCGTATTGCTGCTCCATTCACAAATCGCAAGGAAGCGAGTTTC
CGATGGTTATAATGCCAATAGTCCGCGGTTATTCCAAAATGCTTCGGAAAAATTTGCTATATACAGGTATTACAAGAGCT
AAAAATTTTCTTATCCTATGTGGCGAGCCAGACACATTTGTGTATGGTTTTCAAAAAACAGATGATATGAAACGCCATAC
CTCACTTGTAGAGCGTTTATCATTGGATGAGACAACTGAAATCAAATCGCTAGAAGAAAAGAATGATACCAAAACGGAAT
CAACTGAGAAAGAAGCAATACAATCAGTAGAGGACAAGTTACCTGTTGCTTTAACGCTAGATAATTATTCAGGCATTCAT
CCAATGATTGGAATGGCGGGCATTAGCCCTTATGATTTTATGAATAATGAGAATTGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(159-247)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(591-652)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(680-727)

AAA domain (AAA_30)

(343-551)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

53.137

99.389

0.528