Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   M4S28_RS26515 Genome accession   NZ_CP097293
Coordinates   431492..432205 (-) Length   237 a.a.
NCBI ID   WP_339385596.1    Uniprot ID   -
Organism   Vibrio sp. J383     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 426492..437205
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M4S28_RS01975 (M4S28_01975) - 427589..428077 (+) 489 WP_249632211.1 type II secretion system protein M -
  M4S28_RS01980 (M4S28_01980) - 428079..428858 (+) 780 WP_102464457.1 type II secretion system protein N -
  M4S28_RS01985 (M4S28_01985) cysQ 428993..429820 (-) 828 WP_249632212.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  M4S28_RS01990 (M4S28_01990) nudE 429857..430408 (-) 552 WP_017079321.1 ADP compounds hydrolase NudE -
  M4S28_RS01995 (M4S28_01995) nfuA 430798..431382 (-) 585 WP_004735612.1 Fe-S biogenesis protein NfuA -
  M4S28_RS26515 comF 431492..432205 (-) 714 WP_339385596.1 ComF family protein Machinery gene
  M4S28_RS02005 (M4S28_02005) bioH 432299..433075 (+) 777 WP_249632213.1 pimeloyl-ACP methyl ester esterase BioH -
  M4S28_RS02010 (M4S28_02010) - 433415..433888 (+) 474 WP_004735616.1 hypothetical protein -
  M4S28_RS02015 (M4S28_02015) - 434043..436373 (-) 2331 WP_249632214.1 Tex family protein -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27286.43 Da        Isoelectric Point: 8.8760

>NTDB_id=688343 M4S28_RS26515 WP_339385596.1 431492..432205(-) (comF) [Vibrio sp. J383]
MLSDWLQKHTPRLVTPQCHLCKLDKSHSDTHPRWCDSCLNLFESIPRCQRCGLKTLLTVEQCGQCLSQPPPWHRLYCVGD
YTFPTARYIQQMKYADKFWFARDLAKLLASRIQHPAPLITSVPLHWTRYIHRGFNQSQLLAHYTAQELNVKNTVLFRRSH
STPSQQGLTKSARQSNLKDAFTLRNTNFSAIDYPHVAIIDDVVTTGSTVYQLCQLLLEVGVKRIDIYCICRTPEPSG

Nucleotide


Download         Length: 714 bp        

>NTDB_id=688343 M4S28_RS26515 WP_339385596.1 431492..432205(-) (comF) [Vibrio sp. J383]
ATGTTATCTGATTGGCTACAAAAACACACACCACGTCTGGTCACACCTCAATGCCACCTGTGCAAGCTAGATAAATCGCA
CAGCGATACTCACCCTCGATGGTGTGATTCTTGTCTTAATCTCTTTGAGTCAATTCCTCGCTGCCAACGATGTGGTTTAA
AAACACTGCTCACAGTAGAACAGTGCGGACAGTGTTTATCTCAACCTCCACCTTGGCATCGTCTCTATTGCGTAGGCGAC
TATACCTTCCCAACGGCACGTTATATCCAACAGATGAAATACGCCGATAAGTTCTGGTTTGCTCGTGATCTGGCGAAGCT
GCTAGCGTCACGTATTCAACACCCAGCACCGTTGATTACCAGTGTTCCTTTACATTGGACTCGATACATTCATCGAGGCT
TCAATCAAAGCCAGTTATTGGCACATTACACAGCTCAGGAGCTGAACGTTAAAAACACGGTGTTATTTCGACGTTCTCAC
TCAACACCTTCACAACAAGGATTAACCAAATCAGCAAGACAGAGCAATCTCAAAGATGCTTTCACGCTGCGTAATACGAA
TTTCTCAGCGATTGATTACCCTCACGTCGCGATAATTGATGATGTTGTAACCACAGGCAGTACAGTGTATCAATTATGCC
AATTACTACTTGAAGTGGGCGTGAAAAGAATTGATATTTACTGCATCTGCCGCACTCCTGAGCCCTCTGGATAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(139-234)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

56.356

99.578

0.561
  comF Vibrio campbellii strain DS40M4

49.794

100

0.511