Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   OS085_RS10800 Genome accession   NZ_CP113044
Coordinates   2153090..2153863 (+) Length   257 a.a.
NCBI ID   WP_000055337.1    Uniprot ID   P63843
Organism   Staphylococcus aureus strain LeBlanc     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2148090..2158863
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OS085_RS10780 trmFO 2148434..2149741 (+) 1308 WP_267811032.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  OS085_RS10785 xerC 2150158..2151054 (+) 897 WP_267836516.1 tyrosine recombinase XerC -
  OS085_RS10790 hslV 2151051..2151596 (+) 546 WP_000072681.1 ATP-dependent protease subunit HslV -
  OS085_RS10795 hslU 2151662..2153065 (+) 1404 WP_000379054.1 ATP-dependent protease ATPase subunit HslU -
  OS085_RS10800 codY 2153090..2153863 (+) 774 WP_000055337.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  OS085_RS10805 - 2153914..2154006 (+) 93 WP_001790530.1 hypothetical protein -
  OS085_RS10810 rpsB 2154205..2154972 (+) 768 WP_000268484.1 30S ribosomal protein S2 -
  OS085_RS10815 - 2155006..2155119 (+) 114 WP_001789890.1 hypothetical protein -
  OS085_RS10820 tsf 2155154..2156035 (+) 882 WP_000201387.1 translation elongation factor Ts -
  OS085_RS10825 pyrH 2156172..2156894 (+) 723 WP_000057330.1 UMP kinase -
  OS085_RS10830 frr 2156913..2157467 (+) 555 WP_001280006.1 ribosome recycling factor -
  OS085_RS10835 - 2157840..2158610 (+) 771 WP_000473705.1 isoprenyl transferase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28755.13 Da        Isoelectric Point: 6.0680

>NTDB_id=688276 OS085_RS10800 WP_000055337.1 2153090..2153863(+) (codY) [Staphylococcus aureus strain LeBlanc]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENRELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=688276 OS085_RS10800 WP_000055337.1 2153090..2153863(+) (codY) [Staphylococcus aureus strain LeBlanc]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGATCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATTCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCAT
AGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTACTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCGAT
TGAACATATCTTTGAAGAACTTGGCGGTACGGAAGGCCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTCATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAATAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P63843

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

64.202

100

0.642
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.802

100

0.428