Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   M3Y14_RS22050 Genome accession   NZ_CP097257
Coordinates   4165286..4167622 (-) Length   778 a.a.
NCBI ID   WP_264539208.1    Uniprot ID   -
Organism   Bacillus thuringiensis strain Bt Gxmzu777-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4160286..4172622
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M3Y14_RS22025 (M3Y14_21950) - 4162946..4163290 (+) 345 WP_264539207.1 PH domain-containing protein -
  M3Y14_RS22030 (M3Y14_21955) - 4163329..4164396 (-) 1068 WP_219920366.1 AI-2E family transporter -
  M3Y14_RS22035 (M3Y14_21960) - 4164573..4164785 (+) 213 WP_002122697.1 hypothetical protein -
  M3Y14_RS22040 (M3Y14_21965) - 4164823..4164951 (-) 129 WP_002015286.1 YrzQ family protein -
  M3Y14_RS22045 (M3Y14_21970) - 4164970..4165158 (-) 189 WP_002015288.1 hypothetical protein -
  M3Y14_RS22050 (M3Y14_21975) recD2 4165286..4167622 (-) 2337 WP_264539208.1 ATP-dependent RecD-like DNA helicase Machinery gene
  M3Y14_RS22055 (M3Y14_21980) - 4167730..4168389 (-) 660 WP_264539209.1 tetratricopeptide repeat protein -
  M3Y14_RS22060 (M3Y14_21985) mnmA 4168500..4169615 (-) 1116 WP_002160392.1 tRNA 2-thiouridine(34) synthase MnmA -
  M3Y14_RS22065 (M3Y14_21990) - 4169632..4170777 (-) 1146 WP_264539210.1 cysteine desulfurase family protein -
  M3Y14_RS22070 (M3Y14_21995) cymR 4170813..4171229 (-) 417 WP_000704117.1 cysteine metabolism transcriptional regulator CymR -

Sequence

Protein


Download         Length: 778 a.a.        Molecular weight: 87253.86 Da        Isoelectric Point: 5.2670

>NTDB_id=688171 M3Y14_RS22050 WP_264539208.1 4165286..4167622(-) (recD2) [Bacillus thuringiensis strain Bt Gxmzu777-1]
MGNQHAMDLFEEEKKFIKAQVLHTIFHNEENLYSVVSMKIIETNETYDEKKVMINGHFPRMHEDEVFTLTGHFKDHPKYG
KQYLVETFKKELPQTKAGMVQYLASDLFKGIGKRTAEKIVDHLGEHAISKIMDDPDALNGVVNKQKAQEIYETIIEHQGL
EKVMSFLNGYGFGTKLSIKIYQQYKEMTLEVIRNNPYKLIEEVDGIGFGRADDIGRAIGITGNHDDRVRAGCFYTLENIS
LQLGHVYMEKGQLVRETMSLLNNQEGRVTEEDIVGCVEMMQSEGKVIIEEERVYLASLFYSEKGVVKSIRRLMNQEETPA
FPEAEVLKTLGEIEEQLKVQYAPLQQEAVQTALHKPMMLLTGGPGTGKTTVIKGIVEMYASLHGVSLNPNEYSDDNPFPI
LLTAPTGRAAKRMSESTGLPACTIHRLLGWTPEGSFQRNETDPVQGKLLIIDEFSMVDIWLANQLFKSLPTNIQVIVVGD
EDQLPSVGPGQVLKDLLNAGAVPTVKLTEIYRQAEGSSVIQLAHAIKDGTLPPDLAQNKKDRSFISCTGAQIVEVVKKVC
ENAKTKGFSARDVQVLAPMYRGPAGINVLNEALQEVFNPKKEKSKEIAYGDVVYRRGDKVLQLVNQPESQVFNGDIGEIV
SVFYAKENVEQQDMIIVSFDGIEVTYTKPDLNQITHAYCCSIHKSQGSEFPIVIMPIVKSYNRMLRRNLIYTGITRSKKF
LIICGEEAAFQSGVNRLDDAMRQTTLAGRLQESQGEVQLVTVNGEEMDVENISPYDFM

Nucleotide


Download         Length: 2337 bp        

>NTDB_id=688171 M3Y14_RS22050 WP_264539208.1 4165286..4167622(-) (recD2) [Bacillus thuringiensis strain Bt Gxmzu777-1]
ATGGGAAATCAACATGCAATGGATTTGTTTGAGGAAGAGAAAAAATTTATAAAAGCGCAAGTTCTTCATACCATTTTCCA
CAACGAAGAAAACCTCTATTCCGTTGTCAGTATGAAAATCATTGAAACGAATGAAACATACGACGAAAAAAAAGTAATGA
TAAACGGTCATTTTCCACGTATGCATGAAGATGAAGTGTTTACATTAACAGGTCATTTTAAAGACCACCCAAAGTATGGG
AAACAATATTTAGTGGAAACGTTTAAAAAAGAATTGCCACAAACAAAAGCAGGTATGGTGCAATATTTAGCAAGCGATTT
ATTTAAAGGGATTGGAAAGCGTACAGCCGAAAAAATCGTTGATCATCTCGGTGAGCATGCGATTTCTAAAATTATGGATG
ATCCCGATGCGTTAAATGGTGTTGTAAACAAGCAAAAAGCGCAGGAAATATATGAGACGATTATTGAGCACCAAGGGCTA
GAGAAAGTGATGAGCTTTTTAAATGGCTACGGTTTTGGAACAAAACTTTCTATTAAAATTTATCAGCAATATAAAGAGAT
GACATTAGAAGTGATTCGTAATAATCCATATAAGCTTATTGAAGAAGTGGACGGAATTGGGTTTGGAAGAGCAGATGATA
TAGGGCGTGCAATCGGAATAACGGGCAATCATGACGACCGTGTACGTGCAGGGTGTTTTTATACGTTAGAGAATATTTCA
TTACAACTCGGTCACGTGTATATGGAAAAAGGTCAGCTTGTAAGAGAAACGATGTCACTTTTAAATAATCAAGAAGGCAG
AGTGACTGAGGAAGATATTGTAGGCTGCGTTGAAATGATGCAAAGTGAAGGGAAAGTCATAATAGAAGAAGAGCGAGTGT
ATTTAGCTTCTTTATTCTATTCTGAGAAAGGCGTTGTAAAGTCAATTCGTCGTCTTATGAATCAAGAAGAAACCCCGGCA
TTCCCTGAAGCAGAAGTGTTAAAAACATTAGGAGAAATTGAAGAACAGCTAAAGGTGCAGTATGCGCCGCTTCAGCAAGA
AGCAGTTCAAACTGCACTTCATAAGCCGATGATGTTATTAACAGGTGGACCAGGAACGGGGAAAACAACAGTTATTAAAG
GAATTGTTGAAATGTATGCATCACTTCACGGAGTATCCTTAAATCCGAATGAATATAGTGATGATAATCCATTTCCAATA
TTATTAACGGCTCCAACTGGAAGAGCAGCGAAGCGAATGAGTGAATCGACAGGGCTTCCGGCGTGCACAATTCATCGTCT
GCTCGGTTGGACGCCAGAAGGGTCTTTCCAGCGTAATGAAACCGATCCAGTACAAGGAAAGTTACTCATTATTGATGAGT
TTTCAATGGTTGACATTTGGCTTGCAAATCAGCTATTCAAGTCACTTCCGACAAATATTCAAGTTATCGTTGTAGGTGAT
GAAGATCAGTTGCCATCTGTAGGACCTGGACAAGTGTTAAAAGATTTATTGAATGCAGGTGCGGTTCCAACGGTCAAGCT
TACAGAAATTTATCGTCAAGCGGAAGGGTCATCTGTTATTCAACTTGCCCATGCGATAAAAGACGGAACACTTCCACCAG
ATTTAGCGCAAAATAAAAAAGATCGTTCATTTATCAGCTGTACAGGAGCCCAAATCGTTGAAGTTGTAAAAAAAGTATGT
GAAAATGCCAAGACAAAAGGATTTAGTGCAAGAGATGTACAAGTATTAGCGCCGATGTACCGTGGGCCTGCTGGTATTAA
TGTGCTGAATGAAGCATTGCAAGAAGTGTTTAATCCGAAAAAAGAAAAGAGTAAAGAAATTGCTTACGGTGATGTTGTAT
ACCGCAGAGGTGATAAAGTACTGCAACTCGTTAATCAGCCAGAGAGCCAAGTGTTTAATGGTGATATCGGAGAAATCGTT
TCGGTGTTTTATGCGAAAGAAAACGTTGAGCAACAAGATATGATTATCGTTTCATTTGATGGGATTGAAGTAACCTATAC
AAAGCCAGATTTAAATCAAATTACACATGCATATTGCTGCTCGATTCATAAATCACAAGGTAGTGAATTTCCGATTGTTA
TTATGCCGATTGTAAAAAGCTATAACCGTATGTTACGTCGTAATTTAATTTACACGGGTATTACAAGGAGTAAGAAATTC
CTTATTATTTGCGGGGAGGAAGCAGCTTTTCAATCCGGTGTAAATCGCCTTGATGATGCAATGCGTCAAACGACTTTAGC
TGGTCGATTGCAAGAATCACAAGGCGAAGTGCAGTTGGTGACGGTTAATGGTGAAGAAATGGACGTGGAAAACATTTCAC
CGTATGATTTCATGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(341-548)

Helix-hairpin-helix containing domain (HHH_RecD2)

(156-247)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(676-724)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(589-659)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

56.764

100

0.577