Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   OS091_RS09960 Genome accession   NZ_CP113037
Coordinates   1949903..1950676 (-) Length   257 a.a.
NCBI ID   WP_000055337.1    Uniprot ID   P63843
Organism   Staphylococcus aureus strain Zilean     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1944903..1955676
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OS091_RS09925 - 1945156..1945926 (-) 771 WP_000473705.1 isoprenyl transferase -
  OS091_RS09930 frr 1946299..1946853 (-) 555 WP_001280006.1 ribosome recycling factor -
  OS091_RS09935 pyrH 1946872..1947594 (-) 723 WP_000057330.1 UMP kinase -
  OS091_RS09940 tsf 1947731..1948612 (-) 882 WP_000201386.1 translation elongation factor Ts -
  OS091_RS09945 - 1948647..1948760 (-) 114 WP_031845108.1 hypothetical protein -
  OS091_RS09950 rpsB 1948794..1949561 (-) 768 WP_000268484.1 30S ribosomal protein S2 -
  OS091_RS09955 - 1949760..1949852 (-) 93 WP_031788481.1 hypothetical protein -
  OS091_RS09960 codY 1949903..1950676 (-) 774 WP_000055337.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  OS091_RS09965 hslU 1950701..1952104 (-) 1404 WP_000379054.1 ATP-dependent protease ATPase subunit HslU -
  OS091_RS09970 hslV 1952170..1952715 (-) 546 WP_000072681.1 ATP-dependent protease subunit HslV -
  OS091_RS09975 xerC 1952712..1953608 (-) 897 WP_001015609.1 tyrosine recombinase XerC -
  OS091_RS09980 trmFO 1954026..1955333 (-) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28755.13 Da        Isoelectric Point: 6.0680

>NTDB_id=688017 OS091_RS09960 WP_000055337.1 1949903..1950676(-) (codY) [Staphylococcus aureus strain Zilean]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENRELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=688017 OS091_RS09960 WP_000055337.1 1949903..1950676(-) (codY) [Staphylococcus aureus strain Zilean]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGGTCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATTCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTTTTCCCACCTGAAAACAGAGAATTATTCAT
AGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGAGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTACTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCAAT
TGAACATATCTTTGAAGAACTTGGCGGTACAGAAGGCCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTCATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAGTAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P63843

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

64.202

100

0.642
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.802

100

0.428