Detailed information NTG0687923

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: M4270_RS12840
• Genome accession: NZ_CP097228
• Coordinates: 2637666..2638466 (+)
• Length: 266 a.a.
• NCBI ID: WP_004145898.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain 5
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2632666..2643466

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
M4270_RS12805 (M4270_12805)	gspH	2632822..2633337 (+)	516	WP_004194939.1	type II secretion system minor pseudopilin GspH	-
M4270_RS12810 (M4270_12810)	gspI	2633334..2633699 (+)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
M4270_RS12815 (M4270_12815)	gspJ	2633696..2634292 (+)	597	WP_004178612.1	type II secretion system minor pseudopilin GspJ	-
M4270_RS12820 (M4270_12820)	gspK	2634289..2635275 (+)	987	WP_004178610.1	type II secretion system minor pseudopilin GspK	-
M4270_RS12825 (M4270_12825)	gspL	2635262..2636455 (+)	1194	WP_004194919.1	type II secretion system protein GspL	-
M4270_RS12830 (M4270_12830)	-	2636448..2636933 (+)	486	WP_004145896.1	type II secretion system protein M	-
M4270_RS12835 (M4270_12835)	-	2636923..2637669 (+)	747	WP_004178605.1	type II secretion system protein N	-
M4270_RS12840 (M4270_12840)	pilD	2637666..2638466 (+)	801	WP_004145898.1	A24 family peptidase	Machinery gene
M4270_RS12845 (M4270_12845)	hrpB	2638514..2640943 (-)	2430	WP_004177388.1	ATP-dependent helicase HrpB	-
M4270_RS12850 (M4270_12850)	thpR	2641016..2641552 (+)	537	WP_004177389.1	RNA 2',3'-cyclic phosphodiesterase	-
M4270_RS12855 (M4270_12855)	sfsA	2641552..2642268 (+)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
M4270_RS12860 (M4270_12860)	dksA	2642431..2642886 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29389.01 Da
• Isoelectric Point: 8.8894

>NTDB_id=687923 M4270_RS12840 WP_004145898.1 2637666..2638466(+) (pilD) [Klebsiella pneumoniae strain 5]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=687923 M4270_RS12840 WP_004145898.1 2637666..2638466(+) (pilD) [Klebsiella pneumoniae strain 5]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTACTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCATGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTACTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425