Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   OS080_RS06665 Genome accession   NZ_CP113032
Coordinates   1287442..1288215 (+) Length   257 a.a.
NCBI ID   WP_000055337.1    Uniprot ID   P63843
Organism   Staphylococcus aureus strain Akali     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1282442..1293215
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OS080_RS06645 trmFO 1282786..1284093 (+) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  OS080_RS06650 xerC 1284510..1285406 (+) 897 WP_001015597.1 tyrosine recombinase XerC -
  OS080_RS06655 hslV 1285403..1285948 (+) 546 WP_000072681.1 ATP-dependent protease subunit HslV -
  OS080_RS06660 hslU 1286014..1287417 (+) 1404 WP_000379054.1 ATP-dependent protease ATPase subunit HslU -
  OS080_RS06665 codY 1287442..1288215 (+) 774 WP_000055337.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  OS080_RS06670 - 1288266..1288358 (+) 93 WP_001790530.1 hypothetical protein -
  OS080_RS06675 rpsB 1288557..1289324 (+) 768 WP_000268484.1 30S ribosomal protein S2 -
  OS080_RS06680 - 1289358..1289471 (+) 114 WP_001789890.1 hypothetical protein -
  OS080_RS06685 tsf 1289506..1290387 (+) 882 WP_000201387.1 translation elongation factor Ts -
  OS080_RS06690 pyrH 1290524..1291246 (+) 723 WP_000057330.1 UMP kinase -
  OS080_RS06695 frr 1291265..1291819 (+) 555 WP_001280006.1 ribosome recycling factor -
  OS080_RS06700 - 1292192..1292962 (+) 771 WP_000473701.1 isoprenyl transferase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28755.13 Da        Isoelectric Point: 6.0680

>NTDB_id=687900 OS080_RS06665 WP_000055337.1 1287442..1288215(+) (codY) [Staphylococcus aureus strain Akali]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENRELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=687900 OS080_RS06665 WP_000055337.1 1287442..1288215(+) (codY) [Staphylococcus aureus strain Akali]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGATCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATTCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCAT
AGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTACTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCGAT
TGAACATATCTTTGAAGAACTTGGCGGTACGGAAGGCCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTCATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAATAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P63843

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

64.202

100

0.642
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.802

100

0.428