Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   OS090_RS10580 Genome accession   NZ_CP113018
Coordinates   2051124..2051897 (-) Length   257 a.a.
NCBI ID   WP_000055337.1    Uniprot ID   P63843
Organism   Staphylococcus aureus strain Taliyah     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2046124..2056897
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OS090_RS10545 - 2046377..2047147 (-) 771 WP_000473701.1 isoprenyl transferase -
  OS090_RS10550 frr 2047520..2048074 (-) 555 WP_001280006.1 ribosome recycling factor -
  OS090_RS10555 pyrH 2048093..2048815 (-) 723 WP_000057330.1 UMP kinase -
  OS090_RS10560 tsf 2048952..2049833 (-) 882 WP_000201387.1 translation elongation factor Ts -
  OS090_RS10565 - 2049868..2049981 (-) 114 WP_001789890.1 hypothetical protein -
  OS090_RS10570 rpsB 2050015..2050782 (-) 768 WP_000268484.1 30S ribosomal protein S2 -
  OS090_RS10575 - 2050981..2051073 (-) 93 WP_001790530.1 hypothetical protein -
  OS090_RS10580 codY 2051124..2051897 (-) 774 WP_000055337.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  OS090_RS10585 hslU 2051922..2053325 (-) 1404 WP_000379054.1 ATP-dependent protease ATPase subunit HslU -
  OS090_RS10590 hslV 2053391..2053936 (-) 546 WP_000072681.1 ATP-dependent protease subunit HslV -
  OS090_RS10595 xerC 2053933..2054829 (-) 897 WP_001015597.1 tyrosine recombinase XerC -
  OS090_RS10600 trmFO 2055246..2056553 (-) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28755.13 Da        Isoelectric Point: 6.0680

>NTDB_id=687654 OS090_RS10580 WP_000055337.1 2051124..2051897(-) (codY) [Staphylococcus aureus strain Taliyah]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENRELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=687654 OS090_RS10580 WP_000055337.1 2051124..2051897(-) (codY) [Staphylococcus aureus strain Taliyah]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGATCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATTCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCAT
AGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTACTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCGAT
TGAACATATCTTTGAAGAACTTGGCGGTACGGAAGGCCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTCATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAATAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P63843

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

64.202

100

0.642
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.802

100

0.428