Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   M1R55_RS15975 Genome accession   NZ_CP097149
Coordinates   3210354..3210953 (-) Length   199 a.a.
NCBI ID   WP_249392708.1    Uniprot ID   -
Organism   Deinococcus sp. QL22     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3205354..3215953
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M1R55_RS15955 (M1R55_15945) - 3206683..3207702 (+) 1020 WP_249392704.1 tubulin-specific chaperone A -
  M1R55_RS15960 (M1R55_15950) - 3208056..3208211 (+) 156 WP_249392705.1 hypothetical protein -
  M1R55_RS15965 (M1R55_15955) - 3208341..3208973 (+) 633 WP_249392706.1 HNH endonuclease -
  M1R55_RS15970 (M1R55_15960) - 3208991..3210379 (+) 1389 WP_249392707.1 recombinase family protein -
  M1R55_RS15975 (M1R55_15965) comF 3210354..3210953 (-) 600 WP_249392708.1 ComF family protein Machinery gene
  M1R55_RS15980 (M1R55_15970) - 3210950..3211483 (-) 534 WP_249392709.1 hypothetical protein -
  M1R55_RS15985 (M1R55_15975) - 3211755..3212042 (+) 288 WP_249392710.1 hypothetical protein -
  M1R55_RS15990 (M1R55_15980) - 3212059..3212496 (-) 438 WP_249392711.1 hypothetical protein -
  M1R55_RS15995 (M1R55_15985) - 3212580..3214553 (-) 1974 WP_249392712.1 endonuclease -
  M1R55_RS16000 (M1R55_15990) - 3214728..3215651 (-) 924 WP_249392713.1 aldo/keto reductase -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21044.51 Da        Isoelectric Point: 11.2143

>NTDB_id=687495 M1R55_RS15975 WP_249392708.1 3210354..3210953(-) (comF) [Deinococcus sp. QL22]
MTAFLKVIRALLPRRCPGCDSQLGAEAGLCAACRAALMPRIEWHSPMRPQPEPHLVTLGRYVGTTRRAVRALKYGGAQDL
SGVLGSVLARGIPAAWGVTSVVPVPLHSGHQRERGLNQSMLLAEVVGRELGIPAVPAVRRIRATTQQAKLHATERSANLT
GAFLADAGRLPRGPVLLLDDVMTTGGAPITTITPDQASS

Nucleotide


Download         Length: 600 bp        

>NTDB_id=687495 M1R55_RS15975 WP_249392708.1 3210354..3210953(-) (comF) [Deinococcus sp. QL22]
TTGACCGCATTCCTGAAGGTCATTCGGGCCCTATTGCCGCGCCGTTGCCCCGGCTGCGACAGCCAATTGGGGGCAGAGGC
GGGTCTGTGTGCGGCGTGCAGGGCGGCCCTGATGCCCCGCATAGAGTGGCACAGCCCGATGCGCCCGCAGCCGGAACCGC
ATCTGGTCACGCTGGGCCGCTACGTAGGAACCACCCGCCGCGCCGTGCGTGCCCTGAAATACGGCGGCGCACAAGACCTG
TCGGGCGTGCTTGGAAGCGTGCTGGCACGGGGTATTCCGGCAGCGTGGGGGGTAACGTCGGTGGTGCCCGTGCCGCTGCA
CTCTGGCCACCAACGAGAGCGCGGCCTCAATCAATCCATGCTGCTGGCCGAAGTGGTGGGACGGGAACTGGGCATTCCGG
CTGTGCCCGCTGTGCGCCGGATCCGGGCCACGACCCAGCAGGCCAAACTGCACGCCACCGAACGCAGTGCCAACCTCACC
GGGGCATTTCTGGCCGATGCGGGAAGGTTGCCGCGTGGGCCCGTGCTTTTGCTGGATGACGTGATGACCACCGGAGGCGC
ACCCATCACAACAATCACCCCGGATCAAGCGTCAAGCTGA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(8-41)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.538

91.457

0.563