Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   M1R55_RS11590 Genome accession   NZ_CP097149
Coordinates   2286956..2287552 (+) Length   198 a.a.
NCBI ID   WP_064015164.1    Uniprot ID   A0A172TAX3
Organism   Deinococcus sp. QL22     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2281956..2292552
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M1R55_RS11555 (M1R55_11545) - 2282213..2282629 (+) 417 WP_249391915.1 hypothetical protein -
  M1R55_RS11560 (M1R55_11550) - 2282766..2283200 (+) 435 WP_249391916.1 hypothetical protein -
  M1R55_RS11565 (M1R55_11555) - 2283378..2283992 (+) 615 WP_249391917.1 hypothetical protein -
  M1R55_RS11570 (M1R55_11560) - 2284049..2284531 (-) 483 WP_249391918.1 Appr-1-p processing protein -
  M1R55_RS11575 (M1R55_11565) - 2284667..2285197 (+) 531 WP_249391919.1 DUF4274 domain-containing protein -
  M1R55_RS11580 (M1R55_11570) - 2285208..2286617 (+) 1410 WP_249391920.1 recombinase family protein -
  M1R55_RS11585 (M1R55_11575) - 2286634..2286924 (+) 291 WP_064015165.1 YbaB/EbfC family nucleoid-associated protein -
  M1R55_RS11590 (M1R55_11580) recR 2286956..2287552 (+) 597 WP_064015164.1 recombination mediator RecR Machinery gene
  M1R55_RS11595 (M1R55_11585) - 2287741..2288370 (+) 630 WP_249391921.1 GNAT family N-acetyltransferase -
  M1R55_RS11600 (M1R55_11590) - 2288439..2288903 (+) 465 WP_249391922.1 hypothetical protein -
  M1R55_RS11605 (M1R55_11595) rpsT 2288999..2289280 (-) 282 WP_136365122.1 30S ribosomal protein S20 -
  M1R55_RS11610 (M1R55_11600) recX 2289511..2290089 (+) 579 WP_249391923.1 RecX family transcriptional regulator -
  M1R55_RS11620 (M1R55_11610) - 2290526..2291254 (+) 729 WP_249391924.1 metallophosphoesterase -
  M1R55_RS11625 (M1R55_11615) - 2291267..2291923 (-) 657 WP_249391925.1 LrgB family protein -
  M1R55_RS11630 (M1R55_11620) - 2291920..2292309 (-) 390 WP_249391926.1 CidA/LrgA family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21601.98 Da        Isoelectric Point: 6.3349

>NTDB_id=687490 M1R55_RS11590 WP_064015164.1 2286956..2287552(+) (recR) [Deinococcus sp. QL22]
MKYPPSLVALIRELSRLPGIGPKSAQRLAFHLFEQPREDIERLAGSLLAAKRDLHVCPICFNITDADRCDVCSDPNRDQN
LIAVVEEPGDVIAIERSGEYRGLYHVLHGVLSPMNGVGPDKLHIRPLLPRVTEGMEVILATGTTVEGDATALYLQRLLEP
LGALVSRIAYGLPVGGALEYADEVTLGRAMTGRQRVSK

Nucleotide


Download         Length: 597 bp        

>NTDB_id=687490 M1R55_RS11590 WP_064015164.1 2286956..2287552(+) (recR) [Deinococcus sp. QL22]
ATGAAATACCCGCCTTCCCTCGTGGCCCTGATTCGCGAGCTGTCGCGCTTGCCGGGCATCGGCCCCAAGAGCGCCCAGCG
GCTGGCCTTCCACCTGTTCGAGCAGCCCCGCGAAGACATAGAGCGGCTGGCCGGGTCGTTGTTGGCGGCCAAGCGTGACC
TGCATGTGTGCCCGATCTGCTTCAATATCACCGACGCAGACCGCTGTGACGTGTGCAGCGACCCCAACCGAGATCAGAAC
CTGATTGCGGTCGTGGAGGAACCCGGCGACGTGATCGCCATCGAGCGCAGCGGCGAATACCGGGGGCTGTATCACGTGCT
GCACGGCGTTCTGAGTCCTATGAACGGCGTCGGCCCCGATAAGCTGCACATCCGGCCCCTGCTGCCGCGTGTGACGGAAG
GCATGGAAGTGATTCTGGCCACCGGAACCACCGTGGAGGGCGACGCCACCGCGCTGTATTTGCAGCGGTTGCTGGAGCCT
CTGGGCGCACTGGTGAGCCGGATCGCCTACGGGTTGCCGGTGGGCGGCGCACTGGAATATGCCGACGAAGTGACGCTGGG
CCGGGCCATGACGGGGCGGCAGCGGGTCAGTAAGTAG

Domains

Predicted by InterproScan.

Toprim domain (Toprim_4)

(82-169)

RecR protein (RecR_ZnF)

(40-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A172TAX3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

88.889

100

0.889