Detailed information NTG0687488

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: M1R55_RS07615
• Genome accession: NZ_CP097149
• Coordinates: 1577102..1578259 (+)
• Length: 385 a.a.
• NCBI ID: WP_249394063.1
• Uniprot ID: -
• Organism: Deinococcus sp. QL22
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1572102..1583259

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
M1R55_RS07590 (M1R55_07590)	-	1572221..1573555 (+)	1335	WP_249394058.1	GH1 family beta-glucosidase	-
M1R55_RS07595 (M1R55_07595)	-	1573578..1574072 (-)	495	WP_249394059.1	YbaY family lipoprotein	-
M1R55_RS07600 (M1R55_07600)	-	1574182..1574880 (+)	699	WP_249394060.1	DNA-3-methyladenine glycosylase	-
M1R55_RS07605 (M1R55_07605)	-	1574983..1575966 (-)	984	WP_249394061.1	carbohydrate kinase family protein	-
M1R55_RS07610 (M1R55_07610)	-	1575930..1576775 (-)	846	WP_249394062.1	CoA ester lyase	-
M1R55_RS07615 (M1R55_07615)	pilD	1577102..1578259 (+)	1158	WP_249394063.1	A24 family peptidase	Machinery gene
M1R55_RS07620 (M1R55_07620)	-	1578334..1578732 (-)	399	WP_249394064.1	hypothetical protein	-
M1R55_RS07625 (M1R55_07625)	-	1578729..1579286 (-)	558	WP_249394065.1	VUT family protein	-
M1R55_RS07630 (M1R55_07630)	-	1579463..1579957 (-)	495	WP_249394066.1	NUDIX hydrolase	-
M1R55_RS07635 (M1R55_07635)	-	1580042..1580767 (-)	726	WP_249394067.1	arginase	-
M1R55_RS07640 (M1R55_07640)	-	1580758..1581810 (-)	1053	WP_249394068.1	GNAT family N-acetyltransferase	-
M1R55_RS07645 (M1R55_07645)	-	1581807..1582829 (-)	1023	WP_249394069.1	GNAT family N-acetyltransferase	-

Sequence

Protein

• Length: 385 a.a.
• Molecular weight: 40711.29 Da
• Isoelectric Point: 7.1626

>NTDB_id=687488 M1R55_RS07615 WP_249394063.1 1577102..1578259(+) (pilD) [Deinococcus sp. QL22]
MNLDVFIVVCAAVFGLLVGSFSNVLIWRLPRGENIAFPPSHCPHCDHALSPLDLVPVASWLALGGKCRYCRAPIKRRYPV
VELLTGLGYGVIAALFPLGVYGVGTLGLMVLFTLLLVASAIDLDTYTIPDELTLPGVVLGLVFAFFGARAAGAEYNLPNL
PEAVNGALLGAGLLVTIDLLASWVLRRFKERQYPDFPIGYQQISLALLAGAWLGPWWGAGVGLLAVGINLAARRVVRIPE
LLTIGGFLVSVMLGSAGYGMGLILMVQGALAAAGAVSLVAGLYWWIQYLRTAKADTAEDDAPYDPSAMGFGDVKLAAVIG
AFLGWERLLVAVVVAVFAGALFGIVQLALKSENRVKFGPYLALGAVVALIWGAAIVESYRGMLGL

Nucleotide

• Length: 1158 bp

>NTDB_id=687488 M1R55_RS07615 WP_249394063.1 1577102..1578259(+) (pilD) [Deinococcus sp. QL22]
GTGAATCTCGACGTCTTCATCGTAGTGTGCGCCGCCGTATTCGGGTTGTTGGTCGGCTCGTTTTCCAATGTGCTGATCTG
GCGGCTTCCACGCGGTGAAAACATCGCTTTTCCGCCCAGTCATTGCCCGCACTGCGACCACGCCCTCAGTCCCCTAGACC
TCGTGCCTGTGGCCTCCTGGCTGGCGCTGGGGGGCAAATGCCGCTACTGCCGCGCTCCCATCAAGCGGCGGTATCCGGTC
GTAGAATTGCTGACGGGCCTCGGCTACGGCGTCATCGCGGCCCTATTCCCGCTGGGCGTCTACGGCGTGGGCACACTGGG
TCTGATGGTGCTGTTTACGCTGCTGCTGGTCGCCAGCGCCATAGACCTCGACACCTACACCATTCCCGACGAACTGACCC
TGCCCGGCGTGGTGCTGGGGCTGGTGTTTGCCTTCTTCGGGGCGCGGGCGGCGGGGGCCGAATACAACCTACCCAACTTG
CCGGAAGCCGTGAACGGGGCGCTGCTGGGCGCGGGTCTGTTGGTCACCATAGACTTGCTGGCTTCATGGGTGCTGCGGCG
GTTCAAGGAGCGGCAATACCCTGATTTTCCCATCGGCTACCAGCAGATCAGTCTGGCGCTGCTGGCGGGGGCGTGGCTGG
GGCCGTGGTGGGGCGCGGGCGTGGGCCTGCTGGCGGTGGGCATAAATTTGGCGGCTCGGCGTGTGGTGCGTATTCCCGAA
TTGCTCACCATCGGCGGCTTTCTGGTCAGCGTGATGCTGGGCAGCGCAGGCTACGGCATGGGCCTGATTCTGATGGTGCA
GGGAGCACTGGCCGCAGCCGGCGCGGTATCGCTGGTGGCGGGCCTGTACTGGTGGATTCAATATTTACGCACCGCCAAAG
CAGACACAGCCGAAGACGACGCCCCCTACGACCCCAGCGCCATGGGCTTTGGCGACGTGAAACTGGCCGCCGTGATCGGT
GCGTTTTTGGGCTGGGAGCGCTTATTGGTGGCGGTGGTCGTCGCTGTATTTGCCGGGGCCCTGTTCGGCATCGTGCAACT
GGCCCTCAAGAGTGAAAACCGCGTCAAGTTCGGGCCGTATCTGGCCCTCGGCGCAGTGGTGGCGCTGATCTGGGGCGCGG
CGATCGTGGAGAGCTACCGGGGGATGCTGGGGCTGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (13-94)

• Type IV leader peptidase family (Peptidase_A24) (109-225)

• Type IV leader peptidase family (Peptidase_A24) (236-344)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	70.619	100	0.712