Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   M2M89_RS08610 Genome accession   NZ_CP097130
Coordinates   1661631..1662410 (+) Length   259 a.a.
NCBI ID   WP_003220850.1    Uniprot ID   G4NSM6
Organism   Bacillus subtilis strain S16     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1656631..1667410
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M2M89_RS08590 trmFO 1657324..1658631 (+) 1308 WP_015715883.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  M2M89_RS08595 xerC 1658699..1659613 (+) 915 WP_003231988.1 tyrosine recombinase XerC -
  M2M89_RS08600 clpQ 1659626..1660171 (+) 546 WP_003238555.1 ATP-dependent protease subunit ClpQ -
  M2M89_RS08605 hslU 1660179..1661591 (+) 1413 WP_258712685.1 HslU--HslV peptidase ATPase subunit -
  M2M89_RS08610 codY 1661631..1662410 (+) 780 WP_003220850.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  M2M89_RS08615 flgB 1662790..1663179 (+) 390 WP_003245656.1 flagellar basal body rod protein FlgB -
  M2M89_RS08620 flgC 1663179..1663631 (+) 453 WP_021479294.1 flagellar basal body rod protein FlgC -
  M2M89_RS08625 fliE 1663642..1663962 (+) 321 WP_003238544.1 flagellar hook-basal body complex protein FliE -
  M2M89_RS08630 fliF 1664008..1665618 (+) 1611 WP_043940114.1 flagellar basal-body MS-ring/collar protein FliF -
  M2M89_RS08635 fliG 1665631..1666647 (+) 1017 WP_003231981.1 flagellar motor switch protein FliG -
  M2M89_RS08640 fliH 1666640..1667392 (+) 753 WP_032725764.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29013.22 Da        Isoelectric Point: 4.6514

>NTDB_id=687425 M2M89_RS08610 WP_003220850.1 1661631..1662410(+) (codY) [Bacillus subtilis strain S16]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=687425 M2M89_RS08610 WP_003220850.1 1661631..1662410(+) (codY) [Bacillus subtilis strain S16]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTAAACTTCAAGGAAAT
GGCGGAGACGCTGCGGGATGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGGAAACTCCTTGGGTATTCTATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAGTATACGAAAAATCTGTTT
AATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGATCTGTTCCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCACGTTTACAAGATC
AATTCAATGACGATGACTTAATTCTAGCAGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAA
GAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAGGAGCTTGACGGAAACGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCC
GTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACT
TATATCAAGGTGCTAAACAACAAATTCTTAATTGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NSM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

100

100

1
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467