Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   KK0981_RS12860 Genome accession   NZ_AP017971
Coordinates   1817119..1818150 (-) Length   343 a.a.
NCBI ID   WP_000506426.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain KK0981     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1812119..1823150
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KK0981_RS09745 (KK0981_39040) - 1812266..1813027 (-) 762 WP_001107744.1 SDR family NAD(P)-dependent oxidoreductase -
  KK0981_RS09750 (KK0981_39050) ytpR 1813060..1813686 (-) 627 WP_000578309.1 YtpR family tRNA-binding protein -
  KK0981_RS09755 (KK0981_39060) - 1813702..1814019 (-) 318 WP_000615767.1 thioredoxin family protein -
  KK0981_RS09760 (KK0981_39070) - 1814016..1814315 (-) 300 WP_001013974.1 DUF4651 domain-containing protein -
  KK0981_RS12490 - 1814513..1814575 (-) 63 WP_219300018.1 hypothetical protein -
  KK0981_RS09770 - 1814600..1814743 (-) 144 WP_000599602.1 cell wall-binding protein -
  KK0981_RS09775 (KK0981_39080) - 1814952..1815626 (-) 675 WP_000725719.1 LiaF transmembrane domain-containing protein -
  KK0981_RS09780 (KK0981_39090) - 1815631..1816077 (-) 447 WP_000776595.1 LytTR family DNA-binding domain-containing protein -
  KK0981_RS09785 - 1816191..1816694 (-) 504 WP_000800945.1 phosphatase PAP2 family protein -
  KK0981_RS09790 (KK0981_39100) - 1816691..1817053 (-) 363 WP_000078805.1 DUF2200 domain-containing protein -
  KK0981_RS12860 (KK0981_39110) rcrQ 1817119..1818150 (-) 1032 WP_000506426.1 ABC transporter ATP-binding protein Regulator
  KK0981_RS12865 - 1818157..1818978 (-) 822 Protein_1832 ABC transporter permease -
  KK0981_RS09800 (KK0981_39140) - 1818995..1819466 (-) 472 Protein_1833 MarR family winged helix-turn-helix transcriptional regulator -
  KK0981_RS09810 (KK0981_39150) - 1819590..1820306 (-) 717 WP_000532876.1 YebC/PmpR family DNA-binding transcriptional regulator -
  KK0981_RS09815 (KK0981_39160) ply 1821190..1822605 (-) 1416 WP_001284361.1 cholesterol-dependent cytolysin pneumolysin -
  KK0981_RS09820 (KK0981_39170) - 1822616..1823026 (-) 411 WP_000595758.1 hypothetical protein -

Sequence

Protein


Download         Length: 343 a.a.        Molecular weight: 37925.11 Da        Isoelectric Point: 4.4769

>NTDB_id=68735 KK0981_RS12860 WP_000506426.1 1817119..1818150(-) (rcrQ) [Streptococcus pneumoniae strain KK0981]
MGFLLMGALFIVLPRTMVSAKRINQVLDLHSSIQNPVQVQLTDENFKGQVEFKDVTFRYAANSEAVIEHVSFKAETGQTV
AFIGSTGSGKSTLVNLIPRFYDVSAGEILVDGVNVQDYDFSATAHAGQRVAIVGSTGAGKTTIVNLLMKFYEIDKGSIRI
DGVDTKAMTRSEVHDAFSMVLQDTWLFEGTIRDNLIYNQIGISDERMMEASKAVGIHHFIMTLPDGYDTILDDTVTLSVG
QKQLLTIARALLKDAPLLILDEATSSVDTRTEELIQKAMDRLMEGRTSFVIAHRLSTIRNADLILVMKDGNIIEQGNYEE
LMAQGGFYADLYNSQFTEDEAEE

Nucleotide


Download         Length: 1032 bp        

>NTDB_id=68735 KK0981_RS12860 WP_000506426.1 1817119..1818150(-) (rcrQ) [Streptococcus pneumoniae strain KK0981]
ATGGGCTTCCTTCTCATGGGAGCACTCTTCATCGTTCTTCCCCGAACTATGGTCTCTGCTAAGCGGATTAATCAAGTTTT
AGATTTGCATTCTTCTATCCAAAACCCTGTTCAAGTGCAGCTGACTGATGAAAACTTCAAAGGTCAGGTCGAGTTTAAGG
ATGTGACCTTCCGCTATGCGGCAAATTCGGAGGCAGTTATTGAACATGTTAGCTTTAAAGCAGAAACTGGTCAAACAGTG
GCCTTTATTGGGTCAACAGGTTCTGGTAAATCAACTCTGGTCAATCTGATTCCACGTTTCTACGACGTGTCAGCAGGAGA
AATTCTGGTGGACGGTGTCAATGTTCAAGACTATGACTTCTCTGCGACAGCTCATGCTGGTCAAAGGGTTGCCATTGTTG
GGTCGACTGGGGCTGGTAAGACAACCATTGTCAATCTTTTGATGAAATTCTATGAGATTGATAAGGGAAGTATTCGCATT
GATGGTGTGGATACCAAGGCTATGACGCGTTCAGAAGTGCATGATGCCTTTTCAATGGTCTTGCAGGATACCTGGCTCTT
TGAAGGAACTATTCGAGACAATCTCATCTATAATCAAATAGGGATTAGTGATGAACGAATGATGGAAGCTAGTAAGGCTG
TGGGAATTCACCACTTTATTATGACCTTGCCAGATGGCTATGATACCATCTTGGATGACACCGTGACCTTGTCTGTAGGA
CAAAAACAACTATTGACTATTGCTCGTGCCCTTCTTAAGGATGCACCGCTTTTGATTTTGGATGAGGCGACTTCTTCTGT
TGACACACGGACAGAGGAATTGATCCAAAAAGCCATGGACCGTTTGATGGAAGGACGCACATCCTTTGTCATTGCCCACC
GCTTGTCAACCATCCGAAATGCAGACTTGATCTTGGTCATGAAAGATGGAAATATCATCGAGCAAGGCAACTATGAGGAA
CTGATGGCGCAAGGTGGCTTCTACGCTGACTTGTACAATAGTCAATTTACAGAAGATGAAGCAGAAGAATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(68-118)

ABC transporter (ABC_tran)

(120-265)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

80.357

65.306

0.525
  rcrP Streptococcus mutans UA159

37.861

100

0.382

Multiple sequence alignment