Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   OS082_RS10285 Genome accession   NZ_CP113007
Coordinates   2030086..2030859 (-) Length   257 a.a.
NCBI ID   WP_000055337.1    Uniprot ID   P63843
Organism   Staphylococcus aureus strain Ryze     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2025086..2035859
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OS082_RS10250 - 2025339..2026109 (-) 771 WP_000473701.1 isoprenyl transferase -
  OS082_RS10255 frr 2026482..2027036 (-) 555 WP_001280006.1 ribosome recycling factor -
  OS082_RS10260 pyrH 2027055..2027777 (-) 723 WP_000057330.1 UMP kinase -
  OS082_RS10265 tsf 2027914..2028795 (-) 882 WP_000201387.1 translation elongation factor Ts -
  OS082_RS10270 - 2028830..2028943 (-) 114 WP_001789890.1 hypothetical protein -
  OS082_RS10275 rpsB 2028977..2029744 (-) 768 WP_000268484.1 30S ribosomal protein S2 -
  OS082_RS10280 - 2029943..2030035 (-) 93 WP_001790530.1 hypothetical protein -
  OS082_RS10285 codY 2030086..2030859 (-) 774 WP_000055337.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  OS082_RS10290 hslU 2030884..2032287 (-) 1404 WP_000379054.1 ATP-dependent protease ATPase subunit HslU -
  OS082_RS10295 hslV 2032353..2032898 (-) 546 WP_000072681.1 ATP-dependent protease subunit HslV -
  OS082_RS10300 xerC 2032895..2033791 (-) 897 WP_001015597.1 tyrosine recombinase XerC -
  OS082_RS10305 trmFO 2034208..2035515 (-) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28755.13 Da        Isoelectric Point: 6.0680

>NTDB_id=687293 OS082_RS10285 WP_000055337.1 2030086..2030859(-) (codY) [Staphylococcus aureus strain Ryze]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENRELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=687293 OS082_RS10285 WP_000055337.1 2030086..2030859(-) (codY) [Staphylococcus aureus strain Ryze]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGATCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATTCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCAT
AGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTACTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCGAT
TGAACATATCTTTGAAGAACTTGGCGGTACGGAAGGCCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTCATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAATAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P63843

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

64.202

100

0.642
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.802

100

0.428